Co-expression analysis

Gene ID	GmaAffx.69670.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=7e-5)
Module size	7 genes
NF	0.51
%ile	82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.98	GmaAffx.69670.1.S1_at	BQ742118	-	-	7e-5	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.67700.1.S1_at	CB063625	-	-	9e-1	At5g13620	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.91473.1.S1_at	CF807198	-	-	3e-22	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	GmaAffx.90745.1.S1_s_at	CF806470	-	-	4e+0	At5g42235	Expressed protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	GmaAffx.83672.1.S1_at	BU926827	-	-	2e-51	At2g26000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.4382.3.S1_at	CA784372	-	-	9e-18	At1g18470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, rbaal12h01_at, orthologous to the query gene, GmaAffx.69670.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.99	100.0	rbaal12h01_at	At4g22670	-	-	4e+0	At3g58290	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig4591_at	At4g22670	-	-	4e-2	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig8241_at	At4g22670	-	-	1e+0	At4g19390	-	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig9703_at	At4g22670	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	EBed02_SQ003_C14_s_at	At4g22670	-	-	3e+0	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig8872_at	At4g22670	-	-	1e-5	At5g57660	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig10700_at	At4g22670	-	-	2e+0	At4g15990	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig24508_at	At4g22670	-	-	3e-2	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig17523_at	At4g22670	-	-	7e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig6401_at	At4g22670	-	-	1e-5	At1g78240	TSD2 (TUMOROUS SHOOT DEVELOPMENT 2)	O.I.	H.G.	S.X.	Please select
0.25	28.9	HW01F06u_at	At4g22670	-	-	3e+0	At5g58360	ATOFP3	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig17513_at	At4g22670	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.	Please select
0.24	27.2	HS08J06u_at	At4g22670	-	-	9e-1	At5g19175	-	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig9554_s_at	At4g22670	-	-	8e-8	At4g01560	MEE49 (maternal effect embryo arrest 49)	O.I.	H.G.	S.X.	Please select
0.24	27.2	HM02P13u_s_at	At4g22670	-	-	6e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig9702_at	At4g22670	-	-	2e-8	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig12601_at	At4g22670	-	-	1e+1	At5g59500	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig3541_s_at	At4g22670	-	-	2e-5	At2g36390	SBE2.1 (starch branching enzyme 2.1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig3144_at	At4g22670	-	-	2e-4	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	HA12H17u_s_at	At4g22670	-	-	1e-21	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig10380_x_at	At4g22670	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig16073_at	At4g22670	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	HI05M04r_s_at	At4g22670	-	-	1e-23	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.17	16.9	EBem05_SQ001_F02_at	At4g22670	-	-	8e+0	At5g17240	SDG40 (SET DOMAIN GROUP 40)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig6681_at	At4g22670	-	-	4e+0	At5g63460	SAP domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	EBed02_SQ003_L11_s_at	At4g22670	-	-	1e-11	At3g60770	40S ribosomal protein S13 (RPS13A)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig23066_at	At4g22670	-	-	1e+0	At5g54890	RNA binding	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig17303_at	At4g22670	-	-	2e-2	At1g63170	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	HW08B21u_s_at	At4g22670	-	-	1e+1	At5g23903	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig3772_at	At4g22670	-	-	1e-1	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig21045_at	At4g22670	-	-	4e+0	At5g51130	methyltransferase	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig6905_s_at	At4g22670	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig6251_at	At4g22670	-	-	3e+0	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig13261_at	At4g22670	-	-	4e-5	At4g13730	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	EBem09_SQ001_B21_s_at	At4g22670	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig20511_at	At4g22670	-	-	2e-2	At2g01900	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	HVSMEi0013P23r2_at	At4g22670	-	-	6e-1	At5g03830	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig7061_s_at	At4g22670	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig25830_at	At4g22670	-	-	5e+0	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig11259_at	At4g22670	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig13484_at	At4g22670	-	-	7e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig20154_at	At4g22670	-	-	2e-2	At1g16440	kinase	O.I.	H.G.	S.X.	Please select
0.08	6.5	HV12N12u_at	At4g22670	-	-	7e-2	At5g41200	AGL75 (AGAMOUS-LIKE 75)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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