Co-expression analysis

Gene ID	GmaAffx.69148.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g32320: - (HF=2e-11)
Module size	39 genes
NF	0.37
%ile	65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	0.97	GmaAffx.69148.1.S1_at	BQ742343	-	-	2e-11	At2g32320	-	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.15629.1.S1_at	BQ627831	-	-	1e-13	At5g09860	nuclear matrix protein-related	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	Gma.13101.1.A1_at	AW350491	-	-	4e-14	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.99	Gma.2136.3.S1_at	BE057237	-	-	4e-156	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.8035.1.S1_at	CA802740	-	-	1e+0	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	GmaAffx.48531.1.S1_at	AW471529	-	-	3e-13	At1g54390	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	GmaAffx.91570.1.A1_s_at	CF807732	-	-	4e-78	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.19085.1.S1_at	BU547298	-	-	3e-27	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.3291.2.S1_at	BM520616	-	-	6e-72	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.8562.1.S1_at	BE820414	-	-	2e-22	At1g02100	leucine carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.1747.1.S1_a_at	BE820956	-	-	1e-19	At4g36940	NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.16791.1.S1_at	CD413628	-	-	5e-26	At5g28350	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.43499.1.S1_at	CD407408	-	-	5e-3	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.16985.1.S1_at	CD395499	-	-	1e-9	At2g47700	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.954.1.S1_at	BI423790	-	-	7e-3	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.1065.1.S1_at	AI416915	-	-	2e-38	At4g14340	CKI1 (CASEIN KINASE I)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	GmaAffx.38951.1.S1_at	BI322098	-	-	4e-17	At4g06634	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	GmaAffx.19843.1.S1_at	BU550809	-	-	2e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.6825.1.S1_s_at	CD399305	-	-	3e-11	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.9858.1.S1_at	CD417339	-	-	2e-13	At3g55005	TON1B (tonneau 1b)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.5527.1.S1_at	AI416580	-	-	1e-5	At5g62600	transportin-SR-related	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.13346.1.S1_at	CD391281	-	-	6e-12	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.3652.1.S1_a_at	BI971436	-	-	4e-10	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.99	Gma.1782.2.S1_a_at	BU579169	-	-	5e-7	At5g15400	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	Gma.10697.2.S1_at	AW424151	-	-	5e-22	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.99	Gma.7574.1.A1_at	AW351139	-	-	3e-8	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	GmaAffx.48414.1.S1_at	AW318136	-	-	4e-3	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.5103.1.S1_at	BI968925	-	-	2e-59	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.7683.1.S1_at	BI968408	-	-	3e-28	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.11256.1.S1_at	CD401123	-	-	7e-28	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.11129.1.S1_x_at	BE657610	-	-	6e-119	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.4225.1.S1_a_at	AW317387	-	-	6e-13	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.5762.1.S1_at	U12735.1	aminoalcoholphosphotransferase	-	2e-47	At1g13560	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.3626.2.S1_x_at	BQ612673	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.40735.1.S1_at	BG315862	MYB transcription factor MYB130	-	4e-7	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.99	Gma.11129.2.S1_x_at	AW310162	-	-	8e-39	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.10782.1.S1_s_at	CD410674	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.4420.1.S1_s_at	CD390821	-	-	5e-20	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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