Co-expression analysis

Gene ID GmaAffx.66424.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g50770: calmodulin-related protein, putative (HF=3e-2)
Module size 8 genes
NF 0.46
%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.90.83GmaAffx.66424.1.S1_atAW306696--3e-2At3g50770calmodulin-related protein, putativeO.I.H.G.S.X.
0.5778.80.83Gma.15431.1.S1_atBG508249--7e-1At1g34490membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedO.I.H.G.S.X.
0.5374.20.81Gma.4525.1.S1_atBI967718--3e-1At1g09560GLP5 (GERMIN-LIKE PROTEIN 5)O.I.H.G.S.X.
0.4766.60.81GmaAffx.11644.1.S1_atAW156827--8e-1At3g1095060S ribosomal protein L37a (RPL37aB)O.I.H.G.S.X.
0.4057.10.87GmaAffx.72230.1.S1_atBF009687--1e-3At3g07990SCPL27 (serine carboxypeptidase-like 27)O.I.H.G.S.X.
0.4057.10.87GmaAffx.50670.1.A1_atBI970234--8e-1At1g18630GR-RBP6 (glycine-rich RNA-binding protein 6)O.I.H.G.S.X.
0.3142.20.89GmaAffx.3364.1.A1_atBE347229--8e-2At4g15100scpl30 (serine carboxypeptidase-like 30)O.I.H.G.S.X.
0.2329.90.85GmaAffx.17452.1.S1_atAW458587--2e-1At3g12370ribosomal protein L10 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.999.8GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
16.499.6GSM209599susceptible_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.194.1.S1_at, orthologous to the query gene, GmaAffx.66424.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6986.5Zm.194.1.S1_atAt3g50770embryo surrounding region2 /// hypothetical protein LOC100275090-1e+0At1g35255unknown proteinO.I.H.G.S.X.
0.5065.7Zm.18330.1.A1_atAt3g50770hypothetical protein LOC100192759-6e-1At5g57490VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4)O.I.H.G.S.X.
0.4658.4Zm.11947.1.A1_atAt3g50770hypothetical protein LOC100277020-4e+0At4g35410clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.1912.8Zm.2814.1.A1_atAt3g50770zinc finger C-x8-C-x5-C-x3-H type family protein-3e+0At5g08100L-asparaginase / L-asparagine amidohydrolaseO.I.H.G.S.X.
0.1710.6Zm.17924.2.S1_a_atAt3g50770--8e-17At3g22590RNA pol II accessory factor Cdc73 family proteinO.I.H.G.S.X.
0.147.7Zm.17442.1.A1_atAt3g50770hypothetical protein LOC100279110-6e+0At3g54570calmodulin-binding protein-relatedO.I.H.G.S.X.
0.115.3Zm.9001.2.S1_atAt3g50770--8e-5At2g28660copper-binding family proteinO.I.H.G.S.X.
0.083.4Zm.15333.1.S1_atAt3g50770hypothetical protein LOC100216740-3e-6At3g07940zinc finger and C2 domain protein, putativeO.I.H.G.S.X.
0.051.9Zm.13217.1.A1_atAt3g50770hypothetical protein LOC100273064-1e+0At1g31500endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.041.5Zm.11379.1.A1_atAt3g50770--5e+0At2g29995unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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