Co-expression analysis

Gene ID	GmaAffx.65773.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g19120: ERD3 (early-responsive to dehydration 3) (HF=2e-44)
Module size	6 genes
NF	0.05
%ile	17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	GmaAffx.65773.1.S1_at	BI320311	-	-	2e-44	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.1479.2.S1_at	AW279120	-	-	6e-21	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	GmaAffx.84862.1.S1_at	AI965964	-	-	1e-29	At5g61240	protein binding	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.98	GmaAffx.37006.2.S1_at	AI494839	-	-	2e-11	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.56409.1.S1_at	BU965321	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.98	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.16771.1.A1_at, orthologous to the query gene, GmaAffx.65773.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.16771.1.A1_at	At4g19120	hypothetical protein LOC100273067	-	6e-21	At2g34300	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.1951.1.S1_at	At4g19120	Hypothetical protein LOC100191706	-	2e+0	At5g49020	PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.17290.1.A1_at	At4g19120	-	-	1e+0	At1g67455	F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.13944.1.A1_at	At4g19120	beta-expansin 8	-	5e-2	At5g55650	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.2928.1.S1_at	At4g19120	ATP binding protein	-	1e+1	At5g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.3516.1.A1_at	At4g19120	hypothetical protein LOC100278237	-	4e+0	At4g06490	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage