Co-expression analysis

Gene ID	GmaAffx.65716.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g35190: proline-rich extensin-like family protein (HF=5e-5)
Module size	6 genes
NF	0.07
%ile	23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.67	GmaAffx.65716.1.A1_x_at	CA853286	-	-	5e-5	At5g35190	proline-rich extensin-like family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.92	PsAffx.C86000041_at	PsAffx.C86000041	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.93	PsAffx.C192000031_at	PsAffx.C192000031	-	-	2e+0	At4g22420	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.93	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.93	PsAffx.C1023000002_at	PsAffx.C1023000002	-	-	3e+0	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.93	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.8	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the grape gene, 1616308_at, orthologous to the query gene, GmaAffx.65716.1.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1616308_at	At5g35190	-	-	7e-2	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1618752_at	At5g35190	-	-	4e-3	At1g79975	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618098_at	At5g35190	hypothetical protein LOC100244989	-	8e-1	At5g63135	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1612717_s_at	At5g35190	hypothetical protein LOC100259033	-	1e+0	At1g01225	NC domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.15	15.6	1611129_s_at	At5g35190	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1614642_at	At5g35190	-	-	6e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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