Co-expression analysis

Gene ID GmaAffx.65716.1.A1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g35190: proline-rich extensin-like family protein (HF=5e-5)
Module size 6 genes
NF 0.07
%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.67GmaAffx.65716.1.A1_x_atCA853286--5e-5At5g35190proline-rich extensin-like family proteinO.I.H.G.S.X.
0.4360.60.92PsAffx.C86000041_atPsAffx.C86000041--2e-1At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.4360.60.93PsAffx.C192000031_atPsAffx.C192000031--2e+0At4g22420-O.I.H.G.S.X.
0.4057.10.93PsAffx.psZG005xN22f_s_atPsAffx.psZG005xN22f--9e+0At5g14602unknown proteinO.I.H.G.S.X.
0.0811.00.93PsAffx.C1023000002_atPsAffx.C1023000002--3e+0At4g21540SPHK1 (SPHINGOSINE KINASE 1)O.I.H.G.S.X.
0.013.40.93HgAffx.13668.1.S1_atCB374314--6e-1At5g49710unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.8GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.498.2GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.797.8GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.597.7GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.297.4GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM182032Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.195.8GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200832.1.S1_x_at, orthologous to the query gene, GmaAffx.65716.1.A1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8597.2PtpAffx.200832.1.S1_x_atAt5g35190--2e-3At4g08370proline-rich extensin-like family proteinO.I.H.G.S.X.
0.2441.8PtpAffx.40862.1.S1_atAt5g35190--7e-2At1g27300unknown proteinO.I.H.G.S.X.
0.2238.3PtpAffx.222814.1.S1_atAt5g35190hypothetical protein-5e-1At5g14010zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2136.5PtpAffx.215134.1.S1_atAt5g35190hypothetical protein-7e-1At3g61990O-methyltransferase family 3 proteinO.I.H.G.S.X.
0.1729.1PtpAffx.88302.1.A1_atAt5g35190--4e-1At5g45428CPuORF24 (Conserved peptide upstream open reading frame 24)O.I.H.G.S.X.
0.1525.3PtpAffx.218760.1.S1_atAt5g35190hypothetical protein-3e+1At5g49040disease resistance-responsive protein-related / dirigent protein-relatedO.I.H.G.S.X.
0.1423.5PtpAffx.225814.1.S1_x_atAt5g35190BED finger-nbs-lrr resistance protein-2e-1At1g51480disease resistance protein (CC-NBS-LRR class), putativeO.I.H.G.S.X.
0.1118.1PtpAffx.127631.1.A1_atAt5g35190bile acid:Na+ symporter family protein-2e+0At3g48590NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)O.I.H.G.S.X.
0.1016.3PtpAffx.76231.1.A1_atAt5g35190--6e+0At5g54150unknown proteinO.I.H.G.S.X.
0.1016.3PtpAffx.220843.1.S1_x_atAt5g35190hypothetical protein-1e-2At4g04900RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)O.I.H.G.S.X.
0.1016.3PtpAffx.220649.1.S1_x_atAt5g35190--3e+0At3g62930glutaredoxin family proteinO.I.H.G.S.X.
0.0914.6PtpAffx.221877.1.S1_x_atAt5g35190hypothetical protein-2e+0At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.0914.6Ptp.7287.1.S1_atAt5g35190--4e-26At4g29170ATMND1O.I.H.G.S.X.
0.0711.6PtpAffx.249.605.A1_atAt5g35190--4e-4At1g14900HMGA (HIGH MOBILITY GROUP A)O.I.H.G.S.X.
0.069.8PtpAffx.1303.2.S1_atAt5g35190hypothetical protein-2e-1At3g59990MAP2B (METHIONINE AMINOPEPTIDASE 2B)O.I.H.G.S.X.
0.058.3PtpAffx.138732.1.A1_atAt5g35190hypothetical protein-3e+0At5g66980transcriptional factor B3 family proteinO.I.H.G.S.X.
0.046.9PtpAffx.42296.1.A1_atAt5g35190hypothetical protein-6e-1At2g29460ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)O.I.H.G.S.X.
0.046.9PtpAffx.218336.1.S1_atAt5g35190hypothetical protein-6e+0At4g33380unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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