Co-expression analysis

Gene ID	GmaAffx.65716.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g35190: proline-rich extensin-like family protein (HF=5e-5)
Module size	6 genes
NF	0.07
%ile	23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.67	GmaAffx.65716.1.A1_x_at	CA853286	-	-	5e-5	At5g35190	proline-rich extensin-like family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.92	PsAffx.C86000041_at	PsAffx.C86000041	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.93	PsAffx.C192000031_at	PsAffx.C192000031	-	-	2e+0	At4g22420	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.93	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.93	PsAffx.C1023000002_at	PsAffx.C1023000002	-	-	3e+0	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.93	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.8	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the barley gene, HM13L06r_at, orthologous to the query gene, GmaAffx.65716.1.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	HM13L06r_at	At5g35190	-	-	7e-1	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.41	53.9	HY05C09u_x_at	At5g35190	-	-	2e-1	At1g58420	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	HT10H01u_x_at	At5g35190	-	-	1e-14	At1g01350	nucleic acid binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.40	53.1	HVSMEb0006C19r2_at	At5g35190	-	-	4e+0	At2g27260	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	HT09J20u_x_at	At5g35190	-	-	2e+1	At5g54410	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	HA10M13u_x_at	At5g35190	-	-	6e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	HS05F15r_x_at	At5g35190	-	-	2e-1	At3g42385	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	HX11M07r_s_at	At5g35190	-	-	1e-1	At2g42250	CYP712A1	O.I.	H.G.	S.X.	Please select
0.27	32.1	HS09I11u_at	At5g35190	-	-	1e-6	At3g05570	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	HZ56B02r_at	At5g35190	-	-	3e+0	At3g57250	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	HS09A23u_x_at	At5g35190	-	-	3e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig3144_at	At5g35190	-	-	2e-4	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	HA11G09u_x_at	At5g35190	-	-	9e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	EBem09_SQ005_B14_s_at	At5g35190	-	-	5e-1	At2g38830	tumor susceptibility protein-related	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig2341_x_at	At5g35190	-	-	5e+0	At4g14380	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	rbasd18c22_at	At5g35190	-	-	1e+0	At1g60250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	HV_CEa0009K11r2_at	At5g35190	-	-	3e+0	At4g23010	UDP-galactose transporter-related	O.I.	H.G.	S.X.	Please select
0.21	22.6	HS18B10u_x_at	At5g35190	-	-	7e+0	At4g01750	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	O.I.	H.G.	S.X.	Please select
0.20	21.1	HA10M09u_x_at	At5g35190	-	-	1e+1	At5g42235	Expressed protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	HVSMEb0010L13r2_at	At5g35190	-	-	1e+0	At5g19970	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig10700_at	At5g35190	-	-	2e+0	At4g15990	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	HU14M19u_s_at	At5g35190	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.18	18.2	HS17P17u_at	At5g35190	-	-	2e-1	At2g12405	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig5298_at	At5g35190	-	-	1e-6	At5g50810	TIM8	O.I.	H.G.	S.X.	Please select
0.17	16.9	HA10K08u_at	At5g35190	-	-	4e+0	At1g15830	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	HU08M20u_x_at	At5g35190	-	-	2e+0	At2g35750	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig22700_at	At5g35190	-	-	3e-1	At4g32208	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	HVSMEb0009E07r2_s_at	At5g35190	-	-	8e-1	At5g42270	VAR1 (VARIEGATED 1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	EBro08_SQ004_P19_at	At5g35190	-	-	4e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.	Please select
0.14	12.9	HT09I09u_x_at	At5g35190	-	-	6e-4	At2g42740	RPL16A	O.I.	H.G.	S.X.	Please select
0.14	12.9	HA27P15r_at	At5g35190	-	-	2e+1	At5g10990	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	HVSMEh0080C09r2_at	At5g35190	-	-	4e-3	At4g23380	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	rbaal31p03_s_at	At5g35190	-	-	2e-22	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.14	12.9	HM05O08r_s_at	At5g35190	-	-	5e-15	At4g39200	40S ribosomal protein S25 (RPS25E)	O.I.	H.G.	S.X.	Please select
0.13	11.6	HVSMEc0013A02r2_at	At5g35190	-	-	2e+0	At2g35210	RPA (ROOT AND POLLEN ARFGAP)	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig3965_at	At5g35190	-	-	3e-17	At1g27440	GUT2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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