Co-expression analysis

Gene ID	GmaAffx.65667.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g55450: embryo-abundant protein-related (HF=3e-1)
Module size	9 genes
NF	0.20
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.92	GmaAffx.65667.1.S1_at	AW132771	-	-	3e-1	At1g55450	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.93	Gma.2475.1.S1_at	BM522941	-	-	2e-1	At3g24480	leucine-rich repeat family protein / extensin family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.94	Gma.6462.3.S1_s_at	BI971974	-	-	8e-1	At1g17970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.94	GmaAffx.76730.1.S1_at	AW202151	-	-	6e-76	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.95	GmaAffx.90562.1.S1_s_at	CF806287	-	-	2e-42	At5g22740	ATCSLA02	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.94	Gma.2769.1.S1_s_at	BI893077	-	-	6e-11	At5g56750	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.95	GmaAffx.78500.1.S1_at	BQ134043	-	-	9e-57	At5g64740	CESA6 (CELLULOSE SYNTHASE 6)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.95	Gma.2191.2.S1_a_at	BM885373	-	-	3e-5	At1g51630	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.94	Gma.10757.2.S1_s_at	BG650239	-	-	2e-4	At3g16920	chitinase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.6	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.4	97.6	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.8	97.0	GSM244834	23_CON.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.7	96.8	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM244816	19_V71.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.6	96.7	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.5	96.6	GSM244846	26_CON.I1W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.5	96.6	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4	96.4	GSM244908	3_SLO.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.3	96.2	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM244788	12_V71.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.3	96.2	GSM244937	9_VP9.M2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM244898	38_CON.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM244779	10_SLO.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM244820	1_V71.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.1	95.8	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.0	95.6	GSM244790	13_SLO.I1W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.0	95.6	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.0	95.6	GSM244903	39_SLO.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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