Co-expression analysis

Gene ID	GmaAffx.65255.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g76990: ACR3 (HF=1e-7)
Module size	8 genes
NF	0.12
%ile	30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.94	GmaAffx.65255.1.A1_at	BU545616	-	-	1e-7	At1g76990	ACR3	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	Gma.13588.1.S1_at	CD401190	-	-	9e-1	At5g53040	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.95	Gma.7114.1.A1_at	BG156723	-	-	3e-4	At1g76990	ACR3	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.95	GmaAffx.1166.1.S1_at	BE822888	Dof20	-	2e-4	At3g47500	CDF3 (CYCLING DOF FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.96	GmaAffx.71293.1.S1_s_at	AW569180	-	-	3e+0	At1g35255	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.96	Gma.6246.1.S1_at	AW348532	-	-	3e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.96	GmaAffx.90596.1.S1_s_at	CF806321	-	-	5e-3	At4g33985	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.95	Gma.5210.1.S1_at	AW349120	-	-	1e-12	At5g41410	BEL1 (BELL 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

A co-expression module including the maize gene, Zm.12627.1.S1_at, orthologous to the query gene, GmaAffx.65255.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	Zm.12627.1.S1_at	At1g76990	-	-	1e+0	At1g43630	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.705.1.S1_at	At1g76990	-	-	4e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.6046.1.A1_at	At1g76990	hypothetical protein LOC100216768	-	1e-1	At3g52180	SEX4 (STARCH-EXCESS 4)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.13363.1.A1_at	At1g76990	hypothetical protein LOC100272241	-	4e+0	At5g51160	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.10803.1.S1_at	At1g76990	desiccation-associated protein	-	4e-5	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2811.1.A1_at	At1g76990	hypothetical protein LOC100279769	-	1e+0	At4g05100	AtMYB74 (myb domain protein 74)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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