Co-expression analysis

Gene ID	GmaAffx.65255.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g76990: ACR3 (HF=1e-7)
Module size	8 genes
NF	0.12
%ile	30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.94	GmaAffx.65255.1.A1_at	BU545616	-	-	1e-7	At1g76990	ACR3	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	Gma.13588.1.S1_at	CD401190	-	-	9e-1	At5g53040	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.95	Gma.7114.1.A1_at	BG156723	-	-	3e-4	At1g76990	ACR3	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.95	GmaAffx.1166.1.S1_at	BE822888	Dof20	-	2e-4	At3g47500	CDF3 (CYCLING DOF FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.96	GmaAffx.71293.1.S1_s_at	AW569180	-	-	3e+0	At1g35255	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.96	Gma.6246.1.S1_at	AW348532	-	-	3e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.96	GmaAffx.90596.1.S1_s_at	CF806321	-	-	5e-3	At4g33985	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.95	Gma.5210.1.S1_at	AW349120	-	-	1e-12	At5g41410	BEL1 (BELL 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

A co-expression module including the grape gene, 1608485_at, orthologous to the query gene, GmaAffx.65255.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1608485_at	At1g76990	hypothetical protein LOC100251681	-	3e-11	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	1615926_at	At1g76990	hypothetical protein LOC100264263	-	4e-7	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1618636_at	At1g76990	hypothetical protein LOC100261289	-	0	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.63	84.3	1621944_at	At1g76990	hypothetical protein LOC100255859	-	8e-118	At2g21330	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.60	81.9	1607753_at	At1g76990	hypothetical protein LOC100263239	-	1e-6	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	1616002_s_at	At1g76990	hypothetical protein LOC100262354	-	2e-100	At2g21330	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.56	79.4	1611238_at	At1g76990	hypothetical protein LOC100263239	-	5e-6	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1611267_at	At1g76990	similar to HDA14 (histone deacetylase 14); histone deacetylase	-	1e-16	At4g33470	hda14 (histone deacetylase 14)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1622065_at	At1g76990	hypothetical protein LOC100240924	-	1e-27	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	1617066_at	At1g76990	hypothetical protein LOC100266170	-	1e-85	At2g26080	AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1609923_at	At1g76990	hypothetical protein LOC100244701	-	2e-27	At3g14415	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	1615602_at	At1g76990	hypothetical protein LOC100264091	-	1e-27	At4g04640	ATPC1	O.I.	H.G.	S.X.	Please select
0.46	66.5	1619987_at	At1g76990	hypothetical protein LOC100256191	-	9e-17	At1g64860	SIGA (SIGMA FACTOR A)	O.I.	H.G.	S.X.	Please select
0.45	64.6	1613102_s_at	At1g76990	hypothetical protein LOC100244092	-	6e-91	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1618171_s_at	At1g76990	zeaxanthin epoxidase	-	3e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1619067_at	At1g76990	hypothetical protein LOC100259429	-	8e-27	At1g70760	CRR23 ((chlororespiratory reduction 23)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1613436_at	At1g76990	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic	-	2e-3	At4g37925	NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1611623_at	At1g76990	hypothetical protein LOC100242600	-	2e-18	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620113_at	At1g76990	hypothetical protein LOC100257414	-	2e-105	At1g62750	SCO1 (SNOWY COTYLEDON 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1609754_s_at	At1g76990	glutamate synthase (ferredoxin)	-	2e-15	At5g04140	GLU1 (GLUTAMATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1612945_s_at	At1g76990	hypothetical protein LOC100254639	-	1e-26	At1g54780	thylakoid lumen 18.3 kDa protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1617428_at	At1g76990	hypothetical protein LOC100259814	-	7e-57	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1620292_at	At1g76990	hypothetical protein LOC100264686	-	3e-1	At2g45434	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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