Co-expression analysis

Gene ID GmaAffx.65255.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g76990: ACR3 (HF=1e-7)
Module size 8 genes
NF 0.12
%ile 30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5576.30.95Gma.13588.1.S1_atCD401190--9e-1At5g53040RWP-RK domain-containing proteinO.I.H.G.S.X.
0.1822.30.95GmaAffx.1166.1.S1_atBE822888Dof20-2e-4At3g47500CDF3 (CYCLING DOF FACTOR 3)O.I.H.G.S.X.
0.1114.20.96GmaAffx.71293.1.S1_s_atAW569180--3e+0At1g35255unknown proteinO.I.H.G.S.X.
0.0710.20.96Gma.6246.1.S1_atAW348532--3e-1At1g49230zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X. proteinO.I.H.G.S.X. (BELL 1)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.396.2GSM209591mock_0hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g76990, orthologous to the query gene, GmaAffx.65255.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g76990844035ACR3F:amino acid binding;P:nitrogen compound metabolic process, metabolic process;C:cytosol;BOPO.I.H.G.S.X.
0.2217.5At2g18750816390calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.2At3g22440821815hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.H.G.S.X.
0.157.8At5g56240835723-F:unknown;P:biological_process unknown;C:unknown;OMFPBO.I.H.G.S.X.
0.114.1At1g02100837541leucine carboxyl methyltransferase family proteinF:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.H.G.S.X.
0.114.1At1g17210838292zinc ion bindingF:zinc ion binding;P:unknown;C:cytosol, nucleus, phragmoplast;OMPFBAO.I.H.G.S.X.
0.103.4At5g41350834137zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:mitochondrion;PMOFVO.I.H.G.S.X.
0.103.4At5g57940835905ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.103.4At1g01360838452unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.092.8At1g58110842178bZIP family transcription factorF:transcription factor activity, sequence-specific DNA binding, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PMOFBO.I.H.G.S.X.
0.092.8At1g27320839621AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.O.I.H.G.S.X.
0.092.8At2g31820817739ankyrin repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MOFBPVAO.I.H.G.S.X.
0.092.8At5g55600835654agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing proteinF:RNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.092.8At4g24520828554ATR1 (ARABIDOPSIS P450 REDUCTASE 1)Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.O.I.H.G.S.X.
0.061.4At1g02120839232VAD1 (VASCULAR ASSOCIATED DEATH1)Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.O.I.H.G.S.X.
0.030.6At1g49850841408zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.H.G.S.X.
0.020.4At1g70660843403MMZ2 (MMS ZWEI HOMOLOGE 2)MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage