CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.65255.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g76990: ACR3 (HF=1e-7)

Module size 8 genes

NF 0.12

%ile 30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 91.9 0.94 GmaAffx.65255.1.A1_at BU545616 - - 1e-7 At1g76990 ACR3 O.I. H.G. S.X.
0.55 76.3 0.95 Gma.13588.1.S1_at CD401190 - - 9e-1 At5g53040 RWP-RK domain-containing protein O.I. H.G. S.X.
0.50 71.7 0.95 Gma.7114.1.A1_at BG156723 - - 3e-4 At1g76990 ACR3 O.I. H.G. S.X.
0.18 22.3 0.95 GmaAffx.1166.1.S1_at BE822888 Dof20 - 2e-4 At3g47500 CDF3 (CYCLING DOF FACTOR 3) O.I. H.G. S.X.
0.11 14.2 0.96 GmaAffx.71293.1.S1_s_at AW569180 - - 3e+0 At1g35255 unknown protein O.I. H.G. S.X.
0.07 10.2 0.96 Gma.6246.1.S1_at AW348532 - - 3e-1 At1g49230 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.05 8.0 0.96 GmaAffx.90596.1.S1_s_at CF806321 - - 5e-3 At4g33985 unknown protein O.I. H.G. S.X.
0.04 7.0 0.95 Gma.5210.1.S1_at AW349120 - - 1e-12 At5g41410 BEL1 (BELL 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 96.2 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g76990, orthologous to the query gene, GmaAffx.65255.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g76990 844035 ACR3 F:amino acid binding;P:nitrogen compound metabolic process, metabolic process;C:cytosol;BOP O.I. H.G. S.X.
0.22 17.5 At2g18750 816390 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.17 10.2 At3g22440 821815 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. H.G. S.X.
0.15 7.8 At5g56240 835723 - F:unknown;P:biological_process unknown;C:unknown;OMFPB O.I. H.G. S.X.
0.11 4.1 At1g02100 837541 leucine carboxyl methyltransferase family protein F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. H.G. S.X.
0.11 4.1 At1g17210 838292 zinc ion binding F:zinc ion binding;P:unknown;C:cytosol, nucleus, phragmoplast;OMPFBA O.I. H.G. S.X.
0.10 3.4 At5g41350 834137 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:mitochondrion;PMOFV O.I. H.G. S.X.
0.10 3.4 At5g57940 835905 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) member of Cyclic nucleotide gated channel family O.I. H.G. S.X.
0.10 3.4 At1g01360 838452 unknown protein F:unknown;P:unknown;C:cellular_component unknown;PB O.I. H.G. S.X.
0.09 2.8 At1g58110 842178 bZIP family transcription factor F:transcription factor activity, sequence-specific DNA binding, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PMOFB O.I. H.G. S.X.
0.09 2.8 At1g27320 839621 AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. O.I. H.G. S.X.
0.09 2.8 At2g31820 817739 ankyrin repeat family protein F:protein binding;P:unknown;C:plasma membrane;MOFBPVA O.I. H.G. S.X.
0.09 2.8 At5g55600 835654 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein F:RNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMF O.I. H.G. S.X.
0.09 2.8 At4g24520 828554 ATR1 (ARABIDOPSIS P450 REDUCTASE 1) Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism. O.I. H.G. S.X.
0.06 1.4 At1g02120 839232 VAD1 (VASCULAR ASSOCIATED DEATH1) Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system. O.I. H.G. S.X.
0.03 0.6 At1g49850 841408 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. H.G. S.X.
0.02 0.4 At1g70660 843403 MMZ2 (MMS ZWEI HOMOLOGE 2) MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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