Co-expression analysis

Gene ID	GmaAffx.64584.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g13260: RAV1 (HF=6e-4)
Module size	6 genes
NF	0.03
%ile	12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	0.76	GmaAffx.64584.2.S1_at	AW099253	-	-	6e-4	At1g13260	RAV1	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.89	GmaAffx.26516.1.S1_at	AW433266	xyloglucan endotransglycosylase precursor	-	9e-1	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.82	GmaAffx.16227.1.S1_at	AW133007	RAV-like DNA-binding protein	-	7e-27	At1g25560	TEM1 (TEMPRANILLO 1)	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.84	GmaAffx.16227.1.S1_s_at	AW133007	RAV-like DNA-binding protein	-	7e-27	At1g25560	TEM1 (TEMPRANILLO 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.87	GmaAffx.93309.1.S1_s_at	CF808307	-	-	1e-5	At4g22710	CYP706A2	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.87	Gma.18044.1.S1_a_at	AW757140	-	-	1e+0	At3g26100	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.7	GSM292158	10_C010.1A.R9A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM292296	42_C076.1E.R9E1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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