Co-expression analysis

Gene ID GmaAffx.64584.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g13260: RAV1 (HF=6e-4)
Module size 6 genes
NF 0.03
%ile 12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6080.70.76GmaAffx.64584.2.S1_atAW099253--6e-4At1g13260RAV1O.I.H.G.S.X.
0.2939.00.89GmaAffx.26516.1.S1_atAW433266xyloglucan endotransglycosylase precursor-9e-1At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.069.00.82GmaAffx.16227.1.S1_atAW133007RAV-like DNA-binding protein-7e-27At1g25560TEM1 (TEMPRANILLO 1)O.I.H.G.S.X.
0.047.00.84GmaAffx.16227.1.S1_s_atAW133007RAV-like DNA-binding protein-7e-27At1g25560TEM1 (TEMPRANILLO 1)O.I.H.G.S.X.
0.013.40.87GmaAffx.93309.1.S1_s_atCF808307--1e-5At4g22710CYP706A2O.I.H.G.S.X.
0.013.40.87Gma.18044.1.S1_a_atAW757140--1e+0At3g26100regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.7GSM29215810_C010.1A.R9A2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM209578resistant_24hours_rep1 *failed QC*GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.696.7GSM29229642_C076.1E.R9E1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM209594resistant_12hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.596.6GSM29310520_C054.1O.R9O3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29225878_C034.1B.R9B3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29220870_C004.1A.R9A1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.496.4GSM209579susceptible_24hours_rep1 *failed QC*GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.195.8GSM209591mock_0hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage