Co-expression analysis

Gene ID	GmaAffx.62763.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g54460: wound-responsive protein-related (HF=7e-1)
Module size	31 genes
NF	0.71
%ile	95.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	0.97	GmaAffx.62763.1.S1_s_at	BE583727	-	-	7e-1	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	PsAffx.CL91Contig1_at	PsAffx.CL91Contig1	-	-	5e+0	At5g04080	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	91.7	0.99	GmaAffx.62760.1.S1_at	BE583548	-	-	2e-1	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.79	90.8	0.98	GmaAffx.26400.1.S1_s_at	BE583546	-	-	7e-7	At4g18730	RPL16B	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.98	GmaAffx.80910.1.S1_s_at	BE583700	-	-	3e+0	At1g77940	60S ribosomal protein L30 (RPL30B)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	GmaAffx.58231.1.S1_at	BE583539	-	-	1e-8	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	PsAffx.CL81Contig1_at	PsAffx.CL81Contig1	-	-	4e-1	At4g02130	GATL6	O.I.	H.G.	S.X.	Please select
0.76	89.7	0.98	GmaAffx.76373.1.S1_s_at	BE583771	-	-	3e+0	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	0.98	GmaAffx.67261.1.S1_s_at	BE583871	-	-	3e-3	At4g02230	60S ribosomal protein L19 (RPL19C)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.98	GmaAffx.76365.1.S1_s_at	BE583617	-	-	2e-4	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.98	GmaAffx.85482.1.S1_s_at	BE583486	-	-	3e-6	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.98	GmaAffx.35360.1.S1_s_at	BE583498	-	-	3e+0	At4g38690	1-phosphatidylinositol phosphodiesterase-related	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.98	GmaAffx.85505.1.S1_s_at	BE584059	-	-	1e+1	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.99	PsAffx.CL9Contig2_at	PsAffx.CL9Contig2	-	-	5e+0	At5g28060	40S ribosomal protein S24 (RPS24B)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.98	PsAffx.C5151000001_s_at	PsAffx.C5151000001	-	-	7e-1	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.98	GmaAffx.58233.1.S1_s_at	BE583591	-	-	2e-1	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.98	PsAffx.CL34Contig2_at	PsAffx.CL34Contig2	-	-	1e+0	At1g13690	ATE1	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.98	PsAffx.CL20Contig1_at	PsAffx.CL20Contig1	-	-	5e-6	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	PsAffx.C43000063_s_at	PsAffx.C43000063	-	-	3e-9	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.98	PsAffx.CL47Contig1_at	PsAffx.CL47Contig1	-	-	2e-2	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.98	GmaAffx.7953.1.S1_s_at	BE583621	-	-	4e-2	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.99	PsAffx.CL58Contig1_s_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.98	GmaAffx.80905.1.S1_s_at	BE583527	-	-	4e-2	At2g43460	60S ribosomal protein L38 (RPL38A)	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.99	PsAffx.psHB025xH10f_s_at	PsAffx.psHB025xH10f	-	-	3e-4	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	GmaAffx.85484.1.S1_s_at	BE583550	-	-	3e+0	At4g00416	MBD3	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.98	GmaAffx.62765.1.S1_at	BE583499	-	-	3e+0	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	PsAffx.CL55Contig1_at	PsAffx.CL55Contig1	-	-	4e-7	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	GmaAffx.53630.1.S1_s_at	BE584069	-	-	4e+1	At5g01750	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	GmaAffx.71867.1.S1_at	BI972338	-	-	1e+1	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	PsAffx.C53000060_s_at	PsAffx.C53000060	-	-	6e-3	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	PsAffx.CL4Contig1_at	PsAffx.CL4Contig1	-	-	9e-1	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.2	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.3	99.2	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.1	99.0	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.0	99.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9	99.0	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.7	99.0	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.1	98.8	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.2	98.6	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.2	98.6	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.2	98.6	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.2	98.6	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM292182	42_1001.1A.R001L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.4	98.2	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM171719	8_W.L.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM171685	2_Z.L.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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