Co-expression analysis

Gene ID	GmaAffx.61929.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g06890: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.05
%ile	17.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.86	GmaAffx.61929.1.A1_at	AW164784	-	-	2e-1	At3g06890	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.96	GmaAffx.84513.1.S1_at	BE058196	-	-	2e+0	At3g03773	-	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.96	Gma.10652.1.S1_at	CF922946	-	-	1e-13	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.93	Gma.16140.1.S1_at	CD414364	-	-	1e-4	At3g63170	chalcone isomerase	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.96	Gma.3328.1.S1_at	AF020553.1	ribosome-associated protein p40	-	9e-68	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	Gma.16636.1.S1_s_at	AW705534	Clone d1 malate dehydrogenase (Mdh-1) mRNA, nuclear gene encoding mitochondrial protein	-	1e-10	At1g53240	malate dehydrogenase (NAD), mitochondrial	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.5	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.7	98.4	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.2	98.1	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.2	98.1	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.1	98.1	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.0	98.0	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.9	98.0	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.8	97.9	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.7	97.8	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.5	97.7	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.3	97.5	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.3	97.5	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.3	97.5	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.3	97.5	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.2	97.4	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.1	97.3	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.0	97.2	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.9	97.1	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.8	97.0	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.2	96.0	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.1	95.8	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.0	95.6	GSM258505	Soybean shoot apical meristem, 6 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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