Co-expression analysis

Gene ID	GmaAffx.60481.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g56980: unknown protein (HF=2e-1)
Module size	17 genes
NF	0.14
%ile	34.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	0.96	GmaAffx.60481.1.S1_at	BE210582	-	-	2e-1	At5g56980	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.97	GmaAffx.74765.1.S1_at	CA799183	-	-	8e-1	At4g36840	-	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.96	GmaAffx.91913.1.S1_s_at	CF807638	-	-	1e+0	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.97	GmaAffx.69125.1.S1_at	BM521713	-	-	4e-53	At3g03780	AtMS2	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.90864.1.S1_s_at	CF806589	-	-	1e-9	At5g24400	emb2024 (embryo defective 2024)	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.97	Gma.7153.2.S1_at	BU579274	-	-	5e-30	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.97	GmaAffx.88345.1.S1_at	BM885090	-	-	2e-14	At5g11880	diaminopimelate decarboxylase, putative / DAP carboxylase, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.96	Gma.6257.2.S1_a_at	BE658112	-	-	2e-12	At3g03250	UGP (UDP-glucose pyrophosphorylase)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	GmaAffx.79777.1.S1_at	BE475047	-	-	8e-11	At5g25754	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.97	Gma.6655.2.S1_at	AW100226	-	-	6e-12	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.97	GmaAffx.91654.1.S1_s_at	CF807379	-	-	4e-10	At1g04690	KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.97	GmaAffx.85449.1.S1_at	BM527994	-	-	1e+1	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.98	Gma.17372.3.S1_at	BE209742	-	-	3e+0	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.98	GmaAffx.91977.1.S1_s_at	CF807702	-	-	3e-63	At4g02580	NADH-ubiquinone oxidoreductase 24 kDa subunit, putative	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.98	GmaAffx.91135.1.S1_s_at	CF806860	-	-	4e-13	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.93348.1.S1_s_at	CF809073	-	-	3e-59	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.97	GmaAffx.38967.1.S1_at	AW132914	-	-	7e-1	At1g01520	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.1	98.1	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.0	98.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.8	97.9	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.3	97.5	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.2	97.4	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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