Co-expression analysis

Gene ID	GmaAffx.58650.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g06960: small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative (HF=3e-28)
Module size	20 genes
NF	0.47
%ile	77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.7	0.98	GmaAffx.58650.1.S1_at	BE021790	-	-	3e-28	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.90040.1.S1_x_at	CF805765	-	-	2e-88	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.98	Gma.973.1.S1_a_at	CD391361	-	-	1e-69	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	GmaAffx.89272.1.A1_s_at	CK606408	-	-	1e-34	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.6337.1.S1_x_at	CD399268	-	-	5e-31	At4g34555	40S ribosomal protein S25, putative	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.15452.2.S1_at	CD391486	-	-	5e-48	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.98	Gma.17740.1.S1_at	AW164185	-	-	2e-61	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	GmaAffx.90748.1.S1_at	CF806473	-	-	8e-54	At5g28060	40S ribosomal protein S24 (RPS24B)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.99	Gma.6161.1.S1_at	CD400121	-	-	1e-38	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	GmaAffx.90058.1.S1_s_at	CF805783	-	-	1e-9	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.99	GmaAffx.93249.1.S1_s_at	CF807720	-	-	5e-35	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.4710.2.S1_x_at	CD402482	-	-	3e-20	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	Gma.1373.1.S1_a_at	CD392718	-	-	7e-31	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.1465.1.S1_s_at	CD416674	ribosomal protein S11	-	2e-15	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.99	Gma.10826.2.S1_at	BI970873	-	-	8e-9	At5g16130	40S ribosomal protein S7 (RPS7C)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.99	Gma.5354.1.S1_at	CD401290	-	-	1e-7	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.99	Gma.9981.1.S1_at	CD398725	-	-	9e-46	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.3948.1.S1_at	AW317184	-	-	2e-28	At2g46290	eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.756.1.S1_s_at	AW348863	40S ribosomal S4 protein	-	2e-124	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.1	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.1	98.1	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.9	98.0	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.3	97.5	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.5	96.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4	96.4	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3	96.2	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.2	96.0	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.1	95.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0	95.6	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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