Co-expression analysis

Gene ID	GmaAffx.58612.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=6e-19)
Module size	22 genes
NF	0.47
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.1	0.98	GmaAffx.58612.1.S1_at	BM954406	-	-	6e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.90621.1.S1_s_at	CF806346	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	GmaAffx.86611.1.S1_at	BI316735	-	-	2e-34	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	GmaAffx.88360.1.S1_at	BQ473502	-	-	1e-7	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.98	GmaAffx.44003.2.S1_at	BM094470	-	-	1e-13	At5g18830	SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	GmaAffx.90994.1.S1_s_at	CF806719	-	-	7e-12	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.76206.1.S1_at	BE059995	-	-	5e-59	At1g71820	SEC6	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.16282.4.S1_a_at	AW234404	-	-	1e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	GmaAffx.18114.2.S1_at	BU762948	-	-	3e-10	At3g05090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	GmaAffx.91113.1.S1_s_at	CF806834	-	-	1e-31	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.6579.2.S1_at	AW233874	-	-	2e-8	At5g28220	binding	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.99	GmaAffx.87598.1.S1_at	BM524947	-	-	8e-1	At2g13125	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	GmaAffx.92886.1.S1_s_at	CF808611	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	GmaAffx.55210.1.S1_at	BE804778	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.99	GmaAffx.43069.1.S1_at	AI494747	-	-	4e-7	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	GmaAffx.92182.1.S1_s_at	CF807907	-	-	9e-1	At1g69800	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.99	GmaAffx.68394.1.S1_at	BU082577	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.99	Gma.6104.2.S1_a_at	BI320811	-	-	3e-20	At5g63260	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.98	GmaAffx.89525.1.S1_s_at	CK606517	-	-	3e-26	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	GmaAffx.90987.1.S1_at	CF806712	-	-	1e+0	At5g64750	ABR1 (ABA REPRESSOR1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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