CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.58610.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=1e-2)

Module size 7 genes

NF 0.67

%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.9 0.99 GmaAffx.58610.1.S1_at BF066199 - - 1e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.83 92.5 0.99 GmaAffx.68425.1.S1_at BI425905 - - 1e-35 At3g57650 LPAT2 O.I. H.G. S.X.
0.67 86.1 0.99 GmaAffx.29121.1.S1_at BU762958 - - 1e+0 At4g17310 unknown protein O.I. H.G. S.X.
0.60 80.7 0.99 Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) O.I. H.G. S.X.
0.60 80.7 0.99 GmaAffx.56889.1.S1_s_at AW781023 - - 3e-7 At3g59380 FTA (FARNESYLTRANSFERASE A) O.I. H.G. S.X.
0.57 78.8 0.99 GmaAffx.43069.1.S1_at AI494747 - - 4e-7 At1g14570 UBX domain-containing protein O.I. H.G. S.X.
0.48 67.7 0.99 GmaAffx.90621.1.S1_s_at CF806346 - - 4e-50 At2g21270 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.13916.1.A1_at, orthologous to the query gene, GmaAffx.58610.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.5 Zm.13916.1.A1_at At3g49430 peroxidase R15 - 6e-7 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.31 31.6 Zm.1200.1.S1_at At3g49430 - - 9e-1 At5g06630 proline-rich extensin-like family protein O.I. H.G. S.X.
0.24 19.8 Zm.14190.1.S1_at At3g49430 thioredoxin h-like protein - 2e+0 At4g25030 unknown protein O.I. H.G. S.X.
0.23 18.6 Zm.15825.1.S1_at At3g49430 glucan endo-1,3-beta-glucosidase A6 - 2e-2 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.22 16.9 Zm.13188.1.A1_a_at At3g49430 hypothetical protein LOC100193240 /// hypothetical protein LOC100193556 - 5e-32 At3g11940 ATRPS5A (RIBOSOMAL PROTEIN 5A) O.I. H.G. S.X.
0.22 16.9 Zm.4762.1.A1_at At3g49430 - - 2e-6 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) O.I. H.G. S.X.
0.21 15.5 Zm.7727.2.S1_at At3g49430 - - 1e-1 At4g13800 permease-related O.I. H.G. S.X.
0.21 15.5 Zm.5995.2.S1_a_at At3g49430 - - 2e+0 At4g14385 - O.I. H.G. S.X.
0.19 12.8 Zm.18795.1.S1_at At3g49430 hypothetical protein LOC100273526 - 2e-8 At5g11350 endonuclease/exonuclease/phosphatase family protein O.I. H.G. S.X.
0.17 10.6 Zm.18646.1.A1_at At3g49430 hypothetical protein LOC100192859 - 2e-3 At1g28960 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) O.I. H.G. S.X.
0.14 7.7 Zm.12674.1.A1_at At3g49430 - - 5e-5 At1g34350 unknown protein O.I. H.G. S.X.
0.13 6.8 Zm.2175.1.S1_at At3g49430 hypothetical protein LOC100278437 - 7e-1 At2g35470 unknown protein O.I. H.G. S.X.
0.13 6.8 Zm.2780.1.A1_at At3g49430 hypothetical protein LOC100278371 - 4e-1 At1g14270 CAAX amino terminal protease family protein O.I. H.G. S.X.
0.12 5.9 Zm.186.1.S1_at At3g49430 Bowman-Birk type wound-induced proteinase inhibitor WIP1 - 1e+0 At1g20000 TAF11b (TBP-ASSOCIATED FACTOR 11b) O.I. H.G. S.X.
0.12 5.9 Zm.18430.1.S1_at At3g49430 hypothetical protein LOC100272360 - 3e-9 At1g03030 phosphoribulokinase/uridine kinase family protein O.I. H.G. S.X.
0.11 5.3 Zm.13583.2.S1_at At3g49430 Dual-specificity protein-like phosphatase 1 - 8e-1 At2g35680 dual specificity protein phosphatase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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