Co-expression analysis

Gene ID	GmaAffx.58610.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=1e-2)
Module size	7 genes
NF	0.67
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.99	GmaAffx.58610.1.S1_at	BF066199	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.99	GmaAffx.68425.1.S1_at	BI425905	-	-	1e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.99	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.99	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	GmaAffx.43069.1.S1_at	AI494747	-	-	4e-7	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	GmaAffx.90621.1.S1_s_at	CF806346	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611563_at, orthologous to the query gene, GmaAffx.58610.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1611563_at	At3g49430	-	-	2e-4	At5g40980	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1608144_at	At3g49430	hypothetical protein LOC100250645	-	1e+0	At3g61870	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	1611580_at	At3g49430	hypothetical protein LOC100259528	-	1e-20	At5g51010	rubredoxin family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1616588_at	At3g49430	hypothetical protein LOC100268155	-	2e-20	At2g25870	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1613649_at	At3g49430	hypothetical protein LOC100259928	-	2e-13	At2g39000	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1614180_at	At3g49430	-	-	3e-4	At5g02240	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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