Co-expression analysis

Gene ID GmaAffx.57527.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g22570: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=3e-1)
Module size 6 genes
NF 0.01
%ile 6.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.80.93GmaAffx.57527.1.A1_atBU549562--3e-1At3g22570protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.1721.20.93GmaAffx.10633.1.S1_atBU760967--2e-1At1g47317-O.I.H.G.S.X.
0.024.50.93Gma.4820.1.S1_atBI969236--3e-10At2g44280-O.I.H.G.S.X.
0.013.40.95GmaAffx.88044.1.A1_atBU549128--3e-1At4g38060unknown proteinO.I.H.G.S.X.
-1.40.94Gma.2590.5.S1_atCA935591--4e-60At1g63800UBC5 (ubiquitin-conjugating enzyme 5)O.I.H.G.S.X.
-1.40.95Gma.7754.1.S1_atCD409221--9e-10At4g39850PXA1 (PEROXISOMAL ABC TRANSPORTER 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.5GSM209591mock_0hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.696.7GSM209594resistant_12hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HS07G21u_s_at, orthologous to the query gene, GmaAffx.57527.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.5HS07G21u_s_atAt3g22570--2e+1At5g02470DPAO.I.H.G.S.X.
0.6178.7Contig2941_atAt3g22570--2e+0At2g23320WRKY15O.I.H.G.S.X.
0.4458.9Contig6739_atAt3g22570--4e-40At1g69340appr-1-p processing enzyme family proteinO.I.H.G.S.X.
0.3037.0Contig5894_s_atAt3g22570--3e-1At5g33300chromosome-associated kinesin-relatedO.I.H.G.S.X.
0.2630.4HU09F16u_s_atAt3g22570--8e-1At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.1818.2Contig22698_atAt3g22570--1e-1At5g40855unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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