| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
| 0.95 | 99.4 | 0.97 | GmaAffx.56938.1.S1_at | BM178073 | - | - | 3e-6 | At4g10480 | nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative | O.I. | H.G. | S.X. | |
| 0.67 | 86.1 | 0.98 | GmaAffx.91649.1.S1_s_at | CF807374 | ribosomal protein L2 | - | 2e-85 | At2g18020 | EMB2296 (embryo defective 2296) | O.I. | H.G. | S.X. | |
| 0.57 | 78.8 | 0.98 | Gma.11262.1.S1_at | CD415864 | - | - | 2e-27 | At4g26230 | 60S ribosomal protein L31 (RPL31B) | O.I. | H.G. | S.X. | |
| 0.55 | 76.3 | 0.98 | Gma.11262.1.S1_x_at | CD415864 | - | - | 2e-27 | At4g26230 | 60S ribosomal protein L31 (RPL31B) | O.I. | H.G. | S.X. | |
| 0.52 | 73.1 | 0.98 | Gma.5892.1.S1_at | CA852600 | - | - | 3e-15 | At5g64200 | ATSC35 | O.I. | H.G. | S.X. | |
| 0.52 | 73.1 | 0.98 | Gma.15124.1.S1_at | BU548348 | - | - | 1e-41 | At1g27310 | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) | O.I. | H.G. | S.X. | |
| 0.51 | 72.3 | 0.98 | Gma.16803.1.A1_at | CD404227 | - | - | 9e-39 | At2g40290 | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative | O.I. | H.G. | S.X. | |
| 0.48 | 67.7 | 0.98 | GmaAffx.92405.1.S1_s_at | CF808130 | G beta-like protein | - | 2e-49 | At1g18080 | ATARCA | O.I. | H.G. | S.X. | |
| 0.48 | 67.7 | 0.98 | GmaAffx.46538.1.S1_s_at | BM732780 | ribosomal protein S13 | - | 2e-10 | At4g00100 | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) | O.I. | H.G. | S.X. | |
| 0.47 | 66.6 | 0.98 | Gma.11295.2.S1_x_at | BE209656 | - | - | 2e-17 | At5g56670 | 40S ribosomal protein S30 (RPS30C) | O.I. | H.G. | S.X. | |
| 0.47 | 66.6 | 0.98 | GmaAffx.90915.1.S1_s_at | CF806640 | - | - | 2e-42 | At4g16720 | 60S ribosomal protein L15 (RPL15A) | O.I. | H.G. | S.X. | |
| 0.46 | 65.5 | 0.98 | Gma.11061.1.S1_s_at | BI971541 | - | - | 7e-9 | At1g07960 | ATPDIL5-1 (PDI-like 5-1) | O.I. | H.G. | S.X. | |
| 0.44 | 63.3 | 0.98 | Gma.11048.1.S1_at | AW309369 | - | - | 2e-40 | At1g09690 | 60S ribosomal protein L21 (RPL21C) | O.I. | H.G. | S.X. | |
| 0.44 | 63.3 | 0.98 | Gma.11157.1.S1_s_at | AI856076 | - | - | 1e-35 | At5g15200 | 40S ribosomal protein S9 (RPS9B) | O.I. | H.G. | S.X. | |
| 0.42 | 59.3 | 0.98 | GmaAffx.87504.1.S1_at | BI969586 | - | - | 4e-7 | At3g13882 | structural constituent of ribosome | O.I. | H.G. | S.X. | |
| 0.41 | 58.1 | 0.98 | Gma.15234.1.S1_x_at | BE821955 | - | - | 1e-78 | At5g02960 | 40S ribosomal protein S23 (RPS23B) | O.I. | H.G. | S.X. | |
| 0.40 | 57.1 | 0.98 | GmaAffx.84195.1.S1_at | AI440945 | - | - | 2e-54 | At2g40290 | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative | O.I. | H.G. | S.X. | |
| 0.38 | 53.3 | 0.98 | GmaAffx.93562.1.S1_at | CF809287 | 40S ribosomal protein S25 | - | 1e-33 | At2g21580 | 40S ribosomal protein S25 (RPS25B) | O.I. | H.G. | S.X. | |
| 0.38 | 53.3 | 0.98 | GmaAffx.77088.2.S1_s_at | BU090015 | - | - | 2e-1 | At2g44650 | CHL-CPN10 (CHLOROPLAST CHAPERONIN 10) | O.I. | H.G. | S.X. | |
| 0.38 | 53.3 | 0.98 | Gma.18017.2.S1_s_at | CD406719 | - | - | 6e-21 | At1g69620 | RPL34 (RIBOSOMAL PROTEIN L34) | O.I. | H.G. | S.X. | |
| 0.36 | 50.8 | 0.98 | Gma.15789.1.S1_s_at | BU548182 | - | - | 7e-30 | At3g11940 | ATRPS5A (RIBOSOMAL PROTEIN 5A) | O.I. | H.G. | S.X. | |
| 0.36 | 50.8 | 0.98 | GmaAffx.89017.1.A1_s_at | CK605966 | - | - | 1e+0 | At5g57290 | 60S acidic ribosomal protein P3 (RPP3B) | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | 0.98 | Gma.6445.1.S1_at | BE210393 | - | - | 2e-30 | At4g03120 | proline-rich family protein | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | 0.98 | Gma.11303.1.S1_s_at | AW349327 | - | - | 1e-90 | At1g04480 | 60S ribosomal protein L23 (RPL23A) | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | 0.98 | Gma.2015.2.S1_a_at | BU765143 | - | - | 2e-3 | At1g62820 | calmodulin, putative | O.I. | H.G. | S.X. | |
| 0.34 | 47.2 | 0.98 | Gma.3820.3.S1_a_at | BI968156 | - | - | 3e-3 | At1g30230 | elongation factor 1-beta / EF-1-beta | O.I. | H.G. | S.X. | |
| 0.33 | 46.1 | 0.98 | GmaAffx.79097.1.S1_at | BE331146 | - | - | 3e-1 | At3g44760 | unknown protein | O.I. | H.G. | S.X. | |
| 0.32 | 43.7 | 0.98 | Gma.756.1.S1_s_at | AW348863 | 40S ribosomal S4 protein | - | 2e-124 | At5g07090 | 40S ribosomal protein S4 (RPS4B) | O.I. | H.G. | S.X. | |
| 0.32 | 43.7 | 0.98 | Gma.5462.1.S1_x_at | CD393418 | - | - | 3e-26 | At3g45030 | 40S ribosomal protein S20 (RPS20A) | O.I. | H.G. | S.X. | |
| 0.31 | 42.2 | 0.98 | Gma.2881.2.S1_s_at | CD412647 | - | - | 6e-31 | At4g25740 | 40S ribosomal protein S10 (RPS10A) | O.I. | H.G. | S.X. | |
| 0.31 | 42.2 | 0.98 | GmaAffx.91220.1.S1_s_at | CF806007 | - | - | 4e-87 | At3g11940 | ATRPS5A (RIBOSOMAL PROTEIN 5A) | O.I. | H.G. | S.X. | |
| 0.28 | 39.0 | 0.98 | GmaAffx.91235.1.S1_s_at | CF806960 | - | - | 8e-45 | At4g31300 | PBA1 | O.I. | H.G. | S.X. | |
| 0.26 | 33.9 | 0.98 | GmaAffx.34172.1.S1_s_at | BF070551 | - | - | 5e-18 | At1g09150 | pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein | O.I. | H.G. | S.X. | |
| 0.25 | 32.6 | 0.98 | Gma.4039.3.S1_s_at | BI469904 | - | - | 4e-129 | At5g20890 | chaperonin, putative | O.I. | H.G. | S.X. | |
| 0.25 | 32.6 | 0.98 | Gma.17539.2.S1_s_at | BM886770 | proteasome IOTA subunit | - | 1e-36 | At5g35590 | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) | O.I. | H.G. | S.X. | |
| 0.22 | 28.1 | 0.98 | GmaAffx.76766.1.S1_at | BF716189 | - | - | 2e-21 | At2g33340 | nucleotide binding / ubiquitin-protein ligase | O.I. | H.G. | S.X. | |
| 0.21 | 26.6 | 0.98 | Gma.2892.1.S1_at | CD398484 | - | - | 3e-36 | At1g29150 | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 5.2 | 98.1 | GSM309531 | storage protein suppression expt, RNAi biol rep2, tech rep2 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons |  |
| 4.9 | 98.0 | GSM309529 | storage protein suppression expt, RNAi biol rep1, tech rep1 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 4.9 | 98.0 | GSM309557 | storage protein suppression expt, RNAi biol rep1, tech rep2 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 4.9 | 98.0 | GSM309530 | storage protein suppression expt, RNAi biol rep2, tech rep1 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 4.3 | 97.5 | GSM309528 | storage protein suppression expt, control tech rep2 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 4.3 | 97.5 | GSM309527 | storage protein suppression expt, control tech rep1 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.9 | 97.1 | GSM309341 | Wild type 1 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.8 | 97.0 | GSM267288 | Axillary meristem from 10-day-old soybean seedlings repliacte 2 | GSE10607 | Genome-wide analysis of gene expression in the soybean shoot apical meristem | |
| 3.7 | 96.8 | GSM309342 | Wild type 2 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.7 | 96.8 | GSM267287 | Axillary meristem from 10-day-old soybean seedlings | GSE10607 | Genome-wide analysis of gene expression in the soybean shoot apical meristem | |
| 3.6 | 96.7 | GSM258496 | Vegetative soybean shoot apical meristem | GSE10251 | Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans | |
| 3.6 | 96.7 | GSM258499 | Soybean shoot apical meristem, 4 short-day treatment | GSE10251 | Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans | |
| 3.5 | 96.6 | GSM237068 | Soy_shoot apical meristem | GSE10607 | Genome-wide analysis of gene expression in the soybean shoot apical meristem | |
| 3.4 | 96.4 | GSM258501 | Soybean shoot apical meristem, 1 short-day treatment replicate B | GSE10251 | Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans | |
| 3.4 | 96.4 | GSM237069 | Soy_shoot apical meristem2 | GSE10607 | Genome-wide analysis of gene expression in the soybean shoot apical meristem | |
| 3.1 | 95.8 | GSM258502 | Vegetative shoot apical meristem, replicate B | GSE10251 | Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans | |
