Co-expression analysis

Gene ID	GmaAffx.56889.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g59380: FTA (FARNESYLTRANSFERASE A) (HF=3e-7)
Module size	6 genes
NF	0.70
%ile	95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.99	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.99	GmaAffx.91113.1.S1_s_at	CF806834	-	-	1e-31	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.90621.1.S1_s_at	CF806346	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	GmaAffx.68394.1.S1_at	BU082577	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9356.2.A1_a_at, orthologous to the query gene, GmaAffx.56889.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	Zm.9356.2.A1_a_at	At3g59380	-	-	1e-6	At1g74260	PUR4 (purine biosynthesis 4)	O.I.	H.G.	S.X.	Please select
0.84	95.8	Zm.10767.1.A1_at	At3g59380	short-chain dehydrogenase/reductase SDR	-	3e-1	At2g14060	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.82	94.6	Zm.6731.1.A1_at	At3g59380	hypothetical protein LOC100279494	-	1e-14	At1g50670	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.7782.1.A1_at	At3g59380	-	-	3e-1	At5g66250	kinectin-related	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.7526.1.A1_at	At3g59380	hypothetical protein LOC100194111	-	8e-2	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.17585.2.A1_at	At3g59380	-	-	2e+0	At4g22010	sks4 (SKU5 Similar 4)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.10200.2.A1_at	At3g59380	-	-	1e+0	At5g57990	UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.3493.1.S1_at	At3g59380	hypothetical protein LOC100192977	-	9e-25	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.1109.1.A1_at	At3g59380	PH domain containing protein	-	7e-5	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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