Co-expression analysis

Gene ID	GmaAffx.56889.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g59380: FTA (FARNESYLTRANSFERASE A) (HF=3e-7)
Module size	6 genes
NF	0.70
%ile	95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.99	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.99	GmaAffx.91113.1.S1_s_at	CF806834	-	-	1e-31	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.90621.1.S1_s_at	CF806346	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	GmaAffx.68394.1.S1_at	BU082577	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig12731_at, orthologous to the query gene, GmaAffx.56889.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	Contig12731_at	At3g59380	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig14726_at	At3g59380	-	-	2e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig16121_at	At3g59380	-	-	1e-1	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig14780_at	At3g59380	-	-	3e-1	At2g35960	NHL12	O.I.	H.G.	S.X.	Please select
0.20	21.1	HU05P16u_s_at	At3g59380	-	-	4e+0	At3g29670	transferase family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig8938_at	At3g59380	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig11352_at	At3g59380	-	-	3e-5	At3g56120	Met-10+ like family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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