CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.56889.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At3g59380: FTA (FARNESYLTRANSFERASE A) (HF=3e-7)

Module size 6 genes

NF 0.70

%ile 95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.9 0.99 GmaAffx.56889.1.S1_s_at AW781023 - - 3e-7 At3g59380 FTA (FARNESYLTRANSFERASE A) O.I. H.G. S.X.
0.80 91.5 0.99 Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) O.I. H.G. S.X.
0.80 91.5 0.99 GmaAffx.29121.1.S1_at BU762958 - - 1e+0 At4g17310 unknown protein O.I. H.G. S.X.
0.73 88.9 0.99 GmaAffx.91113.1.S1_s_at CF806834 - - 1e-31 At4g23460 beta-adaptin, putative O.I. H.G. S.X.
0.67 86.1 0.99 GmaAffx.90621.1.S1_s_at CF806346 - - 4e-50 At2g21270 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.
0.40 57.1 0.99 GmaAffx.68394.1.S1_at BU082577 - - 3e+0 At5g03660 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g59380, orthologous to the query gene, GmaAffx.56889.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.55 70.6 At3g59380 825107 FTA (FARNESYLTRANSFERASE A) Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. O.I. H.G. S.X.
0.80 89.8 At1g04830 839404 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPB O.I. H.G. S.X.
0.73 85.5 At3g13340 820534 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA O.I. H.G. S.X.
0.72 84.8 At1g13450 837905 DNA binding protein GT-1 F:transcription factor activity;P:regulation of transcription;C:nucleus;PMFOB O.I. H.G. S.X.
0.68 82.2 At5g53440 835425 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. H.G. S.X.
0.67 81.6 At3g21290 821683 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPVA O.I. H.G. S.X.
0.67 81.6 At4g33210 829457 F-box family protein (FBL15) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV O.I. H.G. S.X.
0.64 78.9 At1g09060 837427 transcription factor jumonji (jmjC) domain-containing protein F:protein binding, transcription factor activity, zinc ion binding;P:unknown;C:unknown;PMOF O.I. H.G. S.X.
0.63 78.1 At2g01600 814689 epsin N-terminal homology (ENTH) domain-containing protein F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:membrane;MPFOB O.I. H.G. S.X.
0.62 77.3 At1g04790 839412 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. H.G. S.X.
0.61 76.7 At3g10030 820164 aspartate/glutamate/uridylate kinase family protein F:DNA binding;P:amino acid biosynthetic process;C:cytoplasm;BOPAMF O.I. H.G. S.X.
0.59 74.7 At1g56560 842110 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB O.I. H.G. S.X.
0.59 74.7 At1g04230 839575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBV O.I. H.G. S.X.
0.57 73.8 At3g24200 822006 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA O.I. H.G. S.X.
0.57 73.8 At5g45360 834572 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.55 70.6 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage