Co-expression analysis

Gene ID GmaAffx.56681.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g20720: pentatricopeptide (PPR) repeat-containing protein (HF=8e-1)
Module size 33 genes
NF 0.35
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8893.40.98GmaAffx.56681.1.S1_atCA938383--8e-1At2g20720pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5778.80.98Gma.5722.1.S1_atBU546228--1e-14At4g24100protein kinase family proteinO.I.H.G.S.X.
0.5374.20.98Gma.16949.1.S1_atBI945119--1e-4At1g01650aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.5071.70.98Gma.8562.1.S1_atBE820414--2e-22At1g02100leucine carboxyl methyltransferase family proteinO.I.H.G.S.X.
0.4867.70.98Gma.2628.1.A1_s_atBE823748--4e+0At4g12850far-red impaired responsive family protein / FAR1 family proteinO.I.H.G.S.X.
0.4766.60.98Gma.5114.1.A1_atBI425032--4e-7At3g59500integral membrane HRF1 family proteinO.I.H.G.S.X.
0.4563.90.98Gma.16791.1.S1_atCD413628--5e-26At5g28350-O.I.H.G.S.X.
0.4259.30.98GmaAffx.665.3.S1_atBE440512--2e-11At5g63880VPS20.1O.I.H.G.S.X.
0.3954.50.98Gma.4466.1.S1_atBQ629041--2e-13At5g48160OBE2 (OBERON2)O.I.H.G.S.X.
0.3853.30.98Gma.13346.1.S1_atCD391281--6e-12At1g61780postsynaptic protein-relatedO.I.H.G.S.X.
0.3853.30.98GmaAffx.74684.1.S1_atBU547287--1e+0At1g27970NTF2B (NUCLEAR TRANSPORT FACTOR 2B)O.I.H.G.S.X.
0.3853.30.98Gma.6614.1.S1_atBU082985--7e-11At5g63880VPS20.1O.I.H.G.S.X.
0.3853.30.98Gma.16985.1.S1_atCD395499--1e-9At2g47700zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3751.70.98Gma.7806.1.S1_atBQ454032--8e-5At3g13340WD-40 repeat family proteinO.I.H.G.S.X.
0.3650.80.98GmaAffx.92496.1.S1_s_atCF808221--1e-75At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.3650.80.98Gma.10509.1.A1_atBI968843--2e-12At4g02030-O.I.H.G.S.X.
0.3548.60.98Gma.1747.1.S1_a_atBE820956--1e-19At4g36940NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)O.I.H.G.S.X.
0.3548.60.98Gma.10823.2.S1_atBM307619--2e-82At5g36230eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinO.I.H.G.S.X.
0.3346.10.98Gma.7636.1.S1_atAW351204--1e-20At5g41950bindingO.I.H.G.S.X.
0.3346.10.98Gma.5135.1.S1_atCD406583--5e-44At5g23575transmembrane protein, putativeO.I.H.G.S.X.
0.3346.10.98Gma.13106.1.S1_atCD393221beclin 1 protein-1e-60At3g61710autophagy protein Apg6 familyO.I.H.G.S.X.
0.3040.40.98Gma.8085.1.S1_s_atAW705679--5e-10At2g26280CID7O.I.H.G.S.X.
0.3040.40.98Gma.8597.1.S1_atBU763993--2e-6At3g44340CEF (clone eighty-four)O.I.H.G.S.X.
0.3040.40.98GmaAffx.58915.1.S1_atBU763501--2e-33At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.2939.00.98GmaAffx.71393.1.S1_atAW704787--4e-10At2g47760ALG3O.I.H.G.S.X.
0.2839.00.98Gma.2136.3.S1_atBE057237--4e-156At3g05530RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)O.I.H.G.S.X.
0.2839.00.98Gma.5346.1.S1_x_atBE210783--5e-2At2g35510SRO1 (SIMILAR TO RCD ONE 1)O.I.H.G.S.X.
0.2735.70.98GmaAffx.39202.1.S1_atAW395777--1e-15At3g09300ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)O.I.H.G.S.X.
0.2430.90.98Gma.3626.1.S1_atBE800416--5e-38At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.
0.2329.90.98Gma.8107.1.A1_atBU548294--5e-37At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)O.I.H.G.S.X.
0.2329.90.98Gma.4225.1.S1_a_atAW317387--6e-13At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.2228.10.98Gma.950.1.A1_atBE823935--4e+0At5g03550-O.I.H.G.S.X.
0.2025.10.98Gma.3626.2.S1_x_atBQ612673--2e-60At3g59920ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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