Co-expression analysis

Gene ID GmaAffx.55680.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g56750: Ndr family protein (HF=2e-44)
Module size 6 genes
NF 0.61
%ile 90.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.80.96GmaAffx.55680.1.S1_atBE475029--2e-44At5g56750Ndr family proteinO.I.H.G.S.X.
0.6786.10.98GmaAffx.73080.1.S1_atBI427357--2e-1At4g21620glycine-rich proteinO.I.H.G.S.X.
0.6382.90.97GmaAffx.36562.2.S1_atBM731207--5e-15At1g14970unknown proteinO.I.H.G.S.X.
0.5071.70.98Gma.13878.1.S1_atCD408791--5e+0At5g01070zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5071.70.98GmaAffx.51022.1.S1_atBM519886--9e-1At3g25920RPL15O.I.H.G.S.X.
0.4766.60.97GmaAffx.73253.1.S1_atBI786637--3e-1At5g56550OXS3 (OXIDATIVE STRESS 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.599.9GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
25.899.8GSM308559Mature Soybean (Glycine max) pollen grains Replicate 2GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
24.299.8GSM308560Mature Soybean (Glycine max) pollen grains Replicate 3GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig8803_at, orthologous to the query gene, GmaAffx.55680.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5975.8Contig8803_atAt5g56750--1e-17At5g56750Ndr family proteinO.I.H.G.S.X.
0.6784.7Contig9110_atAt5g56750--2e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.5268.3Contig7933_s_atAt5g56750--5e-1At5g4854033 kDa secretory protein-relatedO.I.H.G.S.X.
0.4458.9Contig4933_atAt5g56750--7e-1At4g33145unknown proteinO.I.H.G.S.X.
0.3443.6Contig6874_atAt5g56750--8e+0At5g14360ubiquitin family proteinO.I.H.G.S.X.
0.3342.6Contig12328_atAt5g56750--4e-17At4g30260integral membrane Yip1 family proteinO.I.H.G.S.X.
0.3138.6Contig5290_atAt5g56750defender against death (dad) 1-7e-15At2g35520DAD2 (DEFENDER AGAINST CELL DEATH 2)O.I.H.G.S.X.
0.2935.5Contig7320_atAt5g56750--2e-1At1g26690emp24/gp25L/p24 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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