Co-expression analysis

Gene ID	GmaAffx.55521.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g15020: thioredoxin family protein (HF=6e-5)
Module size	9 genes
NF	0.14
%ile	35.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	0.96	GmaAffx.55521.2.S1_at	BM523654	-	-	6e-5	At1g15020	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.1517.2.S1_a_at	BE059859	-	-	8e-18	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.7709.1.A1_at	AW350226	-	-	7e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.3720.1.S1_at	BU550185	-	-	2e-66	At4g24860	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.5346.2.S1_a_at	CA801578	-	-	3e+0	At4g19570	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	Gma.8823.2.S1_at	BU765654	-	-	1e-6	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.98	Gma.9522.1.S1_at	AW307593	MYB transcription factor MYB107	-	6e-7	At1g17520	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.1066.1.S1_at	BG363651	-	-	4e-67	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5169.2.S1_s_at, orthologous to the query gene, GmaAffx.55521.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	Ta.5169.2.S1_s_at	At1g15020	-	-	3e+0	At5g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.7363.2.A1_at	At1g15020	-	-	3e-1	At3g47550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.7533.2.S1_at	At1g15020	-	-	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.22929.2.S1_s_at	At1g15020	-	-	7e-9	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.1012.2.S1_at	At1g15020	-	-	3e-4	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.116089.1.S1_at	At1g15020	-	-	3e-5	At3g19590	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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