Co-expression analysis

Gene ID	GmaAffx.55521.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g15020: thioredoxin family protein (HF=6e-5)
Module size	9 genes
NF	0.14
%ile	35.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	0.96	GmaAffx.55521.2.S1_at	BM523654	-	-	6e-5	At1g15020	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.1517.2.S1_a_at	BE059859	-	-	8e-18	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.7709.1.A1_at	AW350226	-	-	7e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.3720.1.S1_at	BU550185	-	-	2e-66	At4g24860	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.5346.2.S1_a_at	CA801578	-	-	3e+0	At4g19570	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	Gma.8823.2.S1_at	BU765654	-	-	1e-6	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.98	Gma.9522.1.S1_at	AW307593	MYB transcription factor MYB107	-	6e-7	At1g17520	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.1066.1.S1_at	BG363651	-	-	4e-67	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, AF146271_at, orthologous to the query gene, GmaAffx.55521.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.4	AF146271_at	At1g15020	-	-	1e-1	At1g69810	WRKY36	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig17513_at	At1g15020	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig19333_at	At1g15020	-	-	6e+0	At1g20350	ATTIM17-1	O.I.	H.G.	S.X.	Please select
0.38	49.5	HZ49P22r_s_at	At1g15020	-	-	9e-1	At5g42825	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig4591_at	At1g15020	-	-	4e-2	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.33	42.6	HVSMEl0020O13r2_s_at	At1g15020	-	-	9e+0	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	HVSMEf0011J01r2_s_at	At1g15020	-	-	6e-2	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.31	38.6	HW09I11u_s_at	At1g15020	aquaporin	-	2e+0	At2g33509	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	rbaal1d15_s_at	At1g15020	-	-	3e+0	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig9703_at	At1g15020	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig3810_at	At1g15020	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.	Please select
0.13	11.6	EBro01_SQ001_I18_at	At1g15020	-	-	3e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	EBem05_SQ001_F02_at	At1g15020	-	-	8e+0	At5g17240	SDG40 (SET DOMAIN GROUP 40)	O.I.	H.G.	S.X.	Please select
0.11	9.4	EBro03_SQ003_G18_at	At1g15020	-	-	6e-2	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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