CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.55521.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g15020: thioredoxin family protein (HF=6e-5)

Module size 9 genes

NF 0.14

%ile 35.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.2 0.96 GmaAffx.55521.2.S1_at BM523654 - - 6e-5 At1g15020 thioredoxin family protein O.I. H.G. S.X.
0.36 50.8 0.98 Gma.1517.2.S1_a_at BE059859 - - 8e-18 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.
0.26 33.9 0.98 Gma.7709.1.A1_at AW350226 - - 7e+0 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.22 28.1 0.98 Gma.3720.1.S1_at BU550185 - - 2e-66 At4g24860 AAA-type ATPase family protein O.I. H.G. S.X.
0.17 21.2 0.98 Gma.5346.2.S1_a_at CA801578 - - 3e+0 At4g19570 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.17 21.2 0.98 Gma.8062.1.A1_a_at BI971176 - - 1e-7 At2g21630 transport protein, putative O.I. H.G. S.X.
0.09 12.0 0.98 Gma.8823.2.S1_at BU765654 - - 1e-6 At5g45560 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.07 10.2 0.98 Gma.9522.1.S1_at AW307593 MYB transcription factor MYB107 - 6e-7 At1g17520 DNA-binding protein, putative O.I. H.G. S.X.
0.06 9.0 0.98 Gma.1066.1.S1_at BG363651 - - 4e-67 At3g13670 protein kinase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g15020, orthologous to the query gene, GmaAffx.55521.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.30 32.1 At1g15020 838067 thioredoxin family protein Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. O.I. H.G. S.X.
0.46 59.8 At5g66030 836733 ATGRIP Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization. O.I. H.G. S.X.
0.43 55.3 At3g62240 825397 zinc finger (C2H2 type) family protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPV O.I. H.G. S.X.
0.40 50.8 At2g35330 818100 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.40 50.8 At3g27530 822375 GC6 (golgin candidate 6) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein. O.I. H.G. S.X.
0.39 48.4 At5g43130 834330 TAF4 (TBP-ASSOCIATED FACTOR 4) F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVA O.I. H.G. S.X.
0.35 41.6 At3g47610 823915 transcription regulator/ zinc ion binding F:transcription regulator activity, zinc ion binding;P:regulation of transcription;C:nucleus;MFOP O.I. H.G. S.X.
0.30 32.1 At1g61690 842466 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;MOFBPAV O.I. H.G. S.X.
0.26 24.4 At2g17030 816206 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage