Co-expression analysis

Gene ID GmaAffx.55521.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g15020: thioredoxin family protein (HF=6e-5)
Module size 9 genes
NF 0.14
%ile 35.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.20.96GmaAffx.55521.2.S1_atBM523654--6e-5At1g15020thioredoxin family proteinO.I.H.G.S.X.
0.3650.80.98Gma.1517.2.S1_a_atBE059859--8e-18At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.2633.90.98Gma.7709.1.A1_atAW350226--7e+0At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.2228.10.98Gma.3720.1.S1_atBU550185--2e-66At4g24860AAA-type ATPase family proteinO.I.H.G.S.X.
0.1721.20.98Gma.5346.2.S1_a_atCA801578--3e+0At4g19570DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1721.20.98Gma.8062.1.A1_a_atBI971176--1e-7At2g21630transport protein, putativeO.I.H.G.S.X.
0.0912.00.98Gma.8823.2.S1_atBU765654--1e-6At5g45560pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinO.I.H.G.S.X.
0.0710.20.98Gma.9522.1.S1_atAW307593MYB transcription factor MYB107-6e-7At1g17520DNA-binding protein, putativeO.I.H.G.S.X. kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g15020, orthologous to the query gene, GmaAffx.55521.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3032.1At1g15020838067thioredoxin family proteinEncodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.O.I.H.G.S.X.
0.4659.8At5g66030836733ATGRIPInvolved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.O.I.H.G.S.X.
0.4355.3At3g62240825397zinc finger (C2H2 type) family proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPVO.I.H.G.S.X.
0.4050.8At2g35330818100protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.4050.8At3g27530822375GC6 (golgin candidate 6)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.O.I.H.G.S.X.
0.3948.4At5g43130834330TAF4 (TBP-ASSOCIATED FACTOR 4)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVAO.I.H.G.S.X.
0.3541.6At3g47610823915transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription;C:nucleus;MFOPO.I.H.G.S.X.
0.3032.1At1g61690842466phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;MOFBPAVO.I.H.G.S.X.
0.2624.4At2g17030816206F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

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