Co-expression analysis

Gene ID	GmaAffx.55210.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g08650: PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) (HF=5e-1)
Module size	6 genes
NF	0.69
%ile	94.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.99	GmaAffx.55210.1.S1_at	BE804778	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	GmaAffx.68425.1.S1_at	BI425905	-	-	1e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	GmaAffx.58610.1.S1_at	BF066199	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.3313.1.A1_a_at, orthologous to the query gene, GmaAffx.55210.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	Zm.3313.1.A1_a_at	At1g08650	-	-	6e+0	At5g25840	unknown protein	O.I.	H.G.	S.X.	Please select
0.96	99.8	Zm.5231.1.S1_at	At1g08650	-	-	2e-1	At2g44950	HUB1 (HISTONE MONO-UBIQUITINATION 1)	O.I.	H.G.	S.X.	Please select
0.93	99.3	Zm.4810.1.A1_at	At1g08650	-	-	5e+0	At3g60390	HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.93	99.3	Zm.481.1.S1_at	At1g08650	mismatch binding protein Mus3	-	2e-8	At4g02070	MSH6 (MUTS HOMOLOG 6)	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.5026.1.A1_at	At1g08650	-	-	4e+0	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.86	96.3	Zm.7386.1.S1_at	At1g08650	DNA binding protein	-	1e-1	At3g50330	HEC2 (HECATE 2)	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.7385.1.A1_at	At1g08650	-	-	7e+0	At5g19473	-	O.I.	H.G.	S.X.	Please select
0.81	94.3	Zm.675.2.S1_at	At1g08650	beta-expansin 5	-	3e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	Zm.3157.4.A1_at	At1g08650	-	-	5e-1	At1g09220	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.7380.1.S1_at	At1g08650	hypothetical protein LOC100280093	-	6e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.5024.1.S1_at	At1g08650	-	-	4e+0	At3g27210	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.5277.1.S1_at	At1g08650	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.4793.3.A1_a_at	At1g08650	hypothetical protein LOC100193376	-	5e-3	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.5025.1.A1_at	At1g08650	-	-	1e+0	At2g06908	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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