Co-expression analysis

Gene ID	GmaAffx.55210.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g08650: PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) (HF=5e-1)
Module size	6 genes
NF	0.69
%ile	94.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.99	GmaAffx.55210.1.S1_at	BE804778	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	GmaAffx.68425.1.S1_at	BI425905	-	-	1e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	GmaAffx.58610.1.S1_at	BF066199	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.217123.1.S1_s_at, orthologous to the query gene, GmaAffx.55210.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	PtpAffx.217123.1.S1_s_at	At1g08650	hypothetical protein	-	2e-1	At5g49120	senescence-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.206245.1.S1_at	At1g08650	hypothetical protein	-	4e-93	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.211281.1.S1_at	At1g08650	hypothetical protein	-	2e-1	At5g57920	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.210235.1.S1_at	At1g08650	hypothetical protein	-	0	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.204090.1.S1_at	At1g08650	hypothetical protein	-	5e-17	At5g39940	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.135096.2.S1_a_at	At1g08650	hypothetical protein	-	8e-17	At4g02790	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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