Co-expression analysis

Gene ID	GmaAffx.55210.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g08650: PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) (HF=5e-1)
Module size	6 genes
NF	0.69
%ile	94.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.99	GmaAffx.55210.1.S1_at	BE804778	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	GmaAffx.68425.1.S1_at	BI425905	-	-	1e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	GmaAffx.58610.1.S1_at	BF066199	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, HB04N02r_x_at, orthologous to the query gene, GmaAffx.55210.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	HB04N02r_x_at	At1g08650	-	-	1e+1	At5g44570	unknown protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig23108_at	At1g08650	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.93	98.7	Contig3147_at	At1g08650	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.87	95.0	Contig21607_at	At1g08650	-	-	2e+1	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig18000_at	At1g08650	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig2160_at	At1g08650	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig3198_at	At1g08650	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.82	93.1	Contig26171_at	At1g08650	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig7079_at	At1g08650	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.76	89.8	Contig2544_at	At1g08650	-	-	1e+0	At3g21890	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	Contig10718_at	At1g08650	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig5460_s_at	At1g08650	-	-	8e-3	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	Contig5241_at	At1g08650	-	-	8e-2	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig25706_at	At1g08650	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig20916_at	At1g08650	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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