Co-expression analysis

Gene ID	GmaAffx.54325.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g76065: - (HF=1e-6)
Module size	28 genes
NF	0.29
%ile	54.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	0.95	GmaAffx.54325.1.S1_at	AW350647	-	-	1e-6	At1g76065	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.83613.1.S1_at	BU761975	-	-	4e-9	At2g36930	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	GmaAffx.65660.1.S1_at	BG237386	-	-	9e-64	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	GmaAffx.72806.1.S1_at	BG651678	-	-	2e+0	At5g47360	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.10029.1.S1_at	BG156068	-	-	7e-1	At1g52315	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.97	Gma.11242.2.S1_a_at	BQ298655	-	-	3e-28	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.1793.1.S1_x_at	AW349902	-	-	4e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	Gma.17896.1.S1_at	AW309257	-	-	2e-34	At1g50380	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.17906.1.S1_s_at	BI702059	-	-	2e-11	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.3125.1.S1_at	CD392634	-	-	8e-16	At5g57440	GS1	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.16923.1.A1_s_at	AI443575	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.2819.1.S1_at	BE821662	-	-	5e-33	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.11190.2.S1_a_at	BM270192	-	-	1e-81	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	Gma.1341.1.S1_a_at	AW350307	-	-	1e-3	At2g33847	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.11021.1.S1_at	CD401781	-	-	3e-33	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.8354.1.S1_s_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.10966.1.S1_at	CD396963	-	-	8e-130	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	GmaAffx.11747.2.S1_s_at	BI944899	-	-	3e-5	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.14251.1.S1_at	CD418459	-	-	2e-12	At5g56940	ribosomal protein S16 family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.7343.1.S1_a_at	BU548960	-	-	1e-8	At4g05450	adrenodoxin-like ferredoxin 2	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.2711.2.S1_x_at	CF920566	-	-	4e-129	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	Gma.6076.1.S1_at	BE804606	-	-	7e-5	At5g50810	TIM8	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.2708.1.S1_at	AW350781	-	-	1e-82	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.2711.1.S1_at	BU545471	-	-	1e-15	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.97	Gma.3177.1.S1_at	CD399870	-	-	2e-15	At4g26780	AR192	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.6575.1.S1_at	CD401299	-	-	2e-15	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	Gma.4208.2.S1_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	Gma.11133.1.S1_s_at	CD396940	-	-	2e-28	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	98.4	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.5	98.3	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.4	98.2	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.2	98.1	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.6	97.7	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.4	97.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.3	97.5	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.8	97.0	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7	96.8	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7	96.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4	96.4	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.2	96.0	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.2	96.0	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.2	96.0	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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