Co-expression analysis

Gene ID	GmaAffx.53962.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62220: exostosin family protein (HF=2e-16)
Module size	20 genes
NF	0.17
%ile	39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	92.6	0.88	GmaAffx.53962.1.S1_at	BU547803	-	-	2e-16	At5g62220	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.90	Gma.3594.2.S1_at	CD393884	-	-	7e-3	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.91	GmaAffx.5736.1.S1_at	AW311553	-	-	2e-26	At3g07990	SCPL27 (serine carboxypeptidase-like 27)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.93	Gma.2116.1.A1_at	CD411773	-	-	5e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.94	Gma.1939.1.S1_at	AW100789	-	-	8e-19	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.89	Gma.2116.1.A1_s_at	CD411773	-	-	5e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.92	Gma.9916.1.S1_at	BG509382	-	-	6e-15	At4g15800	RALFL33 (ralf-like 33)	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.94	GmaAffx.69683.1.S1_at	CA799656	-	-	7e-9	At5g17790	VAR3 (VARIEGATED 3)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.95	Gma.11221.1.S1_at	AW396549	-	-	9e-13	At5g12470	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.93	Gma.7749.1.A1_at	BU549947	-	-	8e-9	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.95	Gma.301.1.S1_at	AW310317	-	-	1e-32	At3g13490	OVA5 (OVULE ABORTION 5)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.95	GmaAffx.2203.1.S1_at	CD415745	-	-	2e-15	At4g19070	cadmium-responsive protein / cadmium induced protein (AS8)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.95	Gma.1484.1.S1_at	BI969651	-	-	6e-1	At3g29320	glucan phosphorylase, putative	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.94	Gma.10721.1.S1_at	AF074940.1	Ferric leghemoglobin reductase-2 precursor	-	5e-33	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.95	Gma.15750.1.S1_at	CD406053	-	-	6e-16	At4g28730	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.93	GmaAffx.82783.1.S1_at	BG653673	-	-	5e-54	At5g18520	-	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.92	Gma.4188.1.S1_a_at	BI967171	-	-	2e-9	At5g65470	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.94	Gma.15088.1.S1_at	CD402034	-	-	6e-38	At4g29670	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.94	Gma.8378.1.S1_at	BI969004	-	-	1e-17	At4g14360	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.93	GmaAffx.20425.1.A1_at	CD412894	Beta-tubulin	-	3e-6	At5g44340	TUB4	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	99.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2	98.9	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2	98.9	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.0	98.8	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.0	98.8	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.0	98.8	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.6	98.7	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.4	98.6	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.4	98.6	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.3	98.6	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.3	98.6	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.2	98.6	GSM201120	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.1	98.5	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.1	98.5	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.1	98.5	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.1	98.5	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.9	98.5	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.7	98.4	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.6	98.3	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.6	98.3	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.6	98.3	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.5	98.3	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.2	98.1	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.4	97.6	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.4	97.6	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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