Co-expression analysis

Gene ID	GmaAffx.52867.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g16860: GCIP-interacting family protein (HF=3e-15)
Module size	25 genes
NF	0.30
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	0.98	GmaAffx.52867.1.A1_at	AW310514	-	-	3e-15	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.4412.1.S1_x_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.10609.1.S1_at	AW350454	GMFP4	-	1e-8	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.2357.1.S1_at	CD391218	-	-	9e-9	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.7903.1.A1_at	BG653026	-	-	2e+0	At1g13330	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.10825.1.S1_at	CD407330	-	-	1e-3	At3g01435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.5562.1.S1_a_at	AW348762	-	-	4e-7	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	Gma.1925.1.S1_at	AW310700	-	-	5e-33	At1g69010	BIM2 (BES1-interacting Myc-like protein 2)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.17588.2.S1_a_at	AW351318	-	-	9e-1	Atmg00860	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.1266.1.S1_a_at	BU548161	-	-	2e-2	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	GmaAffx.38442.1.S1_s_at	BU549565	-	-	2e-9	At4g17620	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.13802.1.S1_at	CD403134	-	-	2e+0	At1g27695	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.7101.1.S1_at	BI471297	-	-	5e-29	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.13346.1.S1_at	CD391281	-	-	6e-12	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.4932.1.S1_at	BI970670	NDX1 homeobox protein	-	2e-5	At4g03090	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	GmaAffx.7280.1.S1_at	AW459314	-	-	8e-9	At4g34040	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.1837.1.S1_at	AW309339	-	-	7e-9	At1g71900	-	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.5567.1.S1_at	BM093246	-	-	5e-5	At5g45360	F-box family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.98	Gma.10751.3.S1_x_at	AI856290	-	-	8e-24	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.98	Gma.1065.1.S1_at	AI416915	-	-	2e-38	At4g14340	CKI1 (CASEIN KINASE I)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.4225.1.S1_a_at	AW317387	-	-	6e-13	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.99	Gma.2668.2.A1_at	BE821049	-	-	4e-6	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.3025.1.S1_at	CA783326	-	-	9e-47	At5g47540	binding	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.98	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage