Co-expression analysis

Gene ID	GmaAffx.50670.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g18630: GR-RBP6 (glycine-rich RNA-binding protein 6) (HF=8e-1)
Module size	6 genes
NF	0.42
%ile	72.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.82	GmaAffx.50670.1.A1_at	BI970234	-	-	8e-1	At1g18630	GR-RBP6 (glycine-rich RNA-binding protein 6)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.83	GmaAffx.66424.1.S1_at	AW306696	-	-	3e-2	At3g50770	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.89	GmaAffx.3364.1.A1_at	BE347229	-	-	8e-2	At4g15100	scpl30 (serine carboxypeptidase-like 30)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.84	GmaAffx.72230.1.S1_at	BF009687	-	-	1e-3	At3g07990	SCPL27 (serine carboxypeptidase-like 27)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.85	Gma.17993.1.S1_at	BQ628525	-	-	2e+0	At4g38660	thaumatin, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.85	GmaAffx.17452.1.S1_at	AW458587	-	-	2e-1	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.7	99.7	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
11.1	99.4	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM294297	49_2429.2I.R158L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293513	30_2029.2A.R045L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293521	38_2003.2A.R270L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293603	33_2059.2B.R199L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293099	15_1129.1O.R082L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293387	71_1569.1Q.R157L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.1	95.8	GSM293129	42_1127.1O.R081L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.0	95.6	GSM293498	17_2003.2A.R270U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the rice gene, OsAffx.25508.1.S1_at, orthologous to the query gene, GmaAffx.50670.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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