Co-expression analysis

Gene ID	GmaAffx.50634.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g41850: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.05
%ile	18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.74	GmaAffx.50634.1.A1_at	BI969214	-	-	3e+0	At5g41850	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.90	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.91	PsAffx.C83000002_at	PsAffx.C83000002	-	-	9e-1	At3g28980	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.92	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.92	HgAffx.16176.1.S1_at	CB375617	-	-	4e+0	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.92	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.1	97.3	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

A co-expression module including the maize gene, Zm.11803.1.A1_at, orthologous to the query gene, GmaAffx.50634.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	Zm.11803.1.A1_at	At5g41850	hypothetical protein LOC100194034	-	4e+0	At5g44650	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.5101.1.S1_at	At5g41850	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.18405.1.A1_at	At5g41850	hypothetical protein LOC100193248	-	3e+0	At5g01881	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.7644.2.S1_at	At5g41850	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.13256.1.A1_at	At5g41850	RNA polymerase sigma factor 2	-	3e-6	At1g64860	SIGA (SIGMA FACTOR A)	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.12433.1.S1_at	At5g41850	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.14833.1.A1_at	At5g41850	-	-	7e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.2743.1.A1_a_at	At5g41850	hypothetical protein LOC100191169	-	5e+0	At5g66640	DAR3 (DA1-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.10098.1.A1_at	At5g41850	hypothetical protein LOC100272958	-	2e-2	At2g44060	late embryogenesis abundant family protein / LEA family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.2076.2.A1_at	At5g41850	hypothetical protein LOC100194265	-	2e-3	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.18281.1.S1_at	At5g41850	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.11621.2.A1_x_at	At5g41850	diphthamide biosynthesis protein 3	-	2e-2	At2g15910	CSL zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.13104.1.S1_a_at	At5g41850	-	-	3e+0	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.17862.1.A1_at	At5g41850	serine/threonine-protein kinase WNK4	-	5e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.12595.1.S1_at	At5g41850	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.2894.1.A1_at	At5g41850	-	-	1e-45	At3g50500	SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)	O.I.	H.G.	S.X.	Please select
0.35	38.9	ZmAffx.720.1.S1_at	At5g41850	-	-	2e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.7739.1.A1_at	At5g41850	-	-	6e+0	At1g49260	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.12674.1.A1_at	At5g41850	-	-	5e-5	At1g34350	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.10362.1.A1_at	At5g41850	cyclin delta-3	-	5e+0	At3g55240	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.12433.1.S1_s_at	At5g41850	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.12736.2.A1_at	At5g41850	-	-	5e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.15975.1.A1_at	At5g41850	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.12844.2.A1_a_at	At5g41850	hypothetical protein LOC100194377	-	4e-10	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.19120.1.A1_at	At5g41850	hypothetical protein LOC100272621	-	4e-7	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.13417.1.A1_at	At5g41850	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.14176.2.S1_at	At5g41850	-	-	2e-32	At1g76810	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.12082.2.A1_a_at	At5g41850	hypothetical protein LOC100278326	-	4e+0	At4g21216	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.7045.1.A1_at	At5g41850	protein pob	-	2e-37	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage