Co-expression analysis

Gene ID	GmaAffx.50634.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g41850: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.05
%ile	18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.74	GmaAffx.50634.1.A1_at	BI969214	-	-	3e+0	At5g41850	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.90	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.91	PsAffx.C83000002_at	PsAffx.C83000002	-	-	9e-1	At3g28980	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.92	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.92	HgAffx.16176.1.S1_at	CB375617	-	-	4e+0	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.92	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.1	97.3	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

A co-expression module including the grape gene, 1616397_at, orthologous to the query gene, GmaAffx.50634.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.7	1616397_at	At5g41850	hypothetical protein LOC100251434	-	7e-14	At5g40980	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	1616892_at	At5g41850	-	-	1e+0	At4g05095	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608179_at	At5g41850	hypothetical protein LOC100260954	-	1e+0	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	1607995_at	At5g41850	hypothetical protein LOC100266278	-	9e-29	At2g07360	SH3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1608294_at	At5g41850	hypothetical LOC100247896	-	1e+0	At5g06230	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1607710_at	At5g41850	hypothetical protein LOC100257507	-	2e-3	At1g31940	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1611311_at	At5g41850	hypothetical protein LOC100241992	-	3e-24	At3g12300	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1609080_at	At5g41850	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615943_at	At5g41850	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	1620211_at	At5g41850	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.38	53.6	1621564_at	At5g41850	-	-	6e-4	At1g77230	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1610656_s_at	At5g41850	hypothetical protein LOC100257829	-	2e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	1622091_at	At5g41850	hypothetical protein LOC100242189	-	4e+0	At2g01360	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	1615727_at	At5g41850	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	1616284_at	At5g41850	hypothetical protein LOC100250368	-	1e-44	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1622086_at	At5g41850	hypothetical protein LOC100265288	-	1e-1	At2g20480	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609314_at	At5g41850	hypothetical protein LOC100266108	-	4e+0	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1614490_at	At5g41850	hypothetical protein LOC100266316	-	1e-29	At5g14310	AtCXE16 (Arabidopsis thaliana carboxyesterase 16)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1613094_at	At5g41850	hypothetical protein LOC100261121	-	1e-13	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616903_at	At5g41850	hypothetical protein LOC100255301	-	3e-5	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1616843_at	At5g41850	hypothetical protein LOC100252068	-	7e-17	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1606498_s_at	At5g41850	ascorbate peroxidase	-	7e-22	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1608170_at	At5g41850	hypothetical protein LOC100248761	-	2e-24	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612915_at	At5g41850	hypothetical protein LOC100247677	-	8e-115	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1606902_a_at	At5g41850	hypothetical protein LOC100248362	-	2e-7	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612335_at	At5g41850	hypothetical protein LOC100259681	-	4e-7	At3g60070	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	1617868_at	At5g41850	hypothetical protein LOC100252587	-	1e+0	At3g03870	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1617183_at	At5g41850	hypothetical protein LOC100258994	-	3e-19	At2g31490	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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