Co-expression analysis

Gene ID	GmaAffx.50634.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g41850: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.05
%ile	18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.74	GmaAffx.50634.1.A1_at	BI969214	-	-	3e+0	At5g41850	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.90	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.91	PsAffx.C83000002_at	PsAffx.C83000002	-	-	9e-1	At3g28980	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.92	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.92	HgAffx.16176.1.S1_at	CB375617	-	-	4e+0	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.92	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.1	97.3	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.29328.1.S1_at, orthologous to the query gene, GmaAffx.50634.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	TaAffx.29328.1.S1_at	At5g41850	-	-	3e+0	At5g05320	monooxygenase, putative (MO3)	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.17189.1.S1_at	At5g41850	-	-	4e-3	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.10132.1.A1_at	At5g41850	-	-	4e+0	At3g15780	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.82043.1.S1_at	At5g41850	-	-	2e-8	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.84515.1.S1_at	At5g41850	-	-	4e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.12290.2.S1_at	At5g41850	-	-	4e-1	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.29460.2.S1_at	At5g41850	-	-	4e+0	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.29673.1.S1_at	At5g41850	-	-	7e+0	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.65688.1.S1_at	At5g41850	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.107438.1.S1_at	At5g41850	-	-	1e-2	At3g26110	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.53697.1.S1_x_at	At5g41850	Ubiquitin carrier protein	-	9e-1	At1g03470	kinase interacting family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage