CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.50634.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g41850: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.05

%ile 18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.74 GmaAffx.50634.1.A1_at BI969214 - - 3e+0 At5g41850 unknown protein O.I. H.G. S.X.
0.44 63.3 0.90 PsAffx.C8000052_at PsAffx.C8000052 - - 4e-1 At2g15280 reticulon family protein (RTNLB10) O.I. H.G. S.X.
0.15 18.7 0.91 PsAffx.C83000002_at PsAffx.C83000002 - - 9e-1 At3g28980 unknown protein O.I. H.G. S.X.
0.15 18.7 0.92 PsAffx.psZG005xN22f_s_at PsAffx.psZG005xN22f - - 9e+0 At5g14602 unknown protein O.I. H.G. S.X.
0.04 7.0 0.92 HgAffx.16176.1.S1_at CB375617 - - 4e+0 At3g60540 sec61beta family protein O.I. H.G. S.X.
0.01 3.4 0.92 PsAffx.C162000008_at PsAffx.C162000008 - - 8e-2 At5g08160 ATPK3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 99.6 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM293641 68_2065.2B.R129U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.1 97.3 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM182035 Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211255.1.S1_at, orthologous to the query gene, GmaAffx.50634.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.211255.1.S1_at At5g41850 hypothetical protein - 4e+0 At5g43490 unknown protein O.I. H.G. S.X.
0.21 36.5 PtpAffx.131973.1.S1_at At5g41850 - - 2e+0 At1g71235 unknown protein O.I. H.G. S.X.
0.11 18.1 PtpAffx.81767.1.A1_at At5g41850 - - 5e+0 At3g02125 unknown protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.106130.1.S1_at At5g41850 - - 7e-1 At2g06095 unknown protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.51766.1.S1_at At5g41850 - - 3e-2 At1g52900 disease resistance protein (TIR class), putative O.I. H.G. S.X.
0.07 11.6 PtpAffx.205338.1.S1_at At5g41850 hypothetical protein - 9e-1 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) O.I. H.G. S.X.
0.05 8.3 PtpAffx.210627.1.S1_at At5g41850 GRAS family transcription factor - 3e+0 At5g40382 cytochrome-c oxidase O.I. H.G. S.X.
0.03 5.2 PtpAffx.214332.1.S1_x_at At5g41850 hypothetical protein - 2e+0 At1g53580 GLY3 (GLYOXALASE II 3) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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