Co-expression analysis

Gene ID	GmaAffx.4970.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g26070: hydroxyproline-rich glycoprotein family protein (HF=3e+0)
Module size	26 genes
NF	0.33
%ile	61.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	0.84	GmaAffx.4970.1.S1_at	BM085400	-	-	3e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.92	Gma.13377.1.S1_at	CD408470	-	-	2e+0	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.94	Gma.13377.2.S1_a_at	CD409238	-	-	3e-2	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.94	Gma.7331.1.S1_at	BU549815	-	-	6e-2	At4g28080	binding	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.84	GmaAffx.43434.1.A1_at	AI938306	-	-	2e+0	At4g27040	VPS22	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.92	GmaAffx.11114.1.A1_at	BI968107	-	-	2e+0	At3g47543	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.89	Gma.15718.1.A1_at	CD399100	-	-	1e+0	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.94	Gma.13003.1.S1_s_at	CD401473	-	-	7e-3	At5g66800	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.93	Gma.13021.1.A1_at	CD397517	-	-	3e-11	At4g17260	L-lactate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.91	Gma.17695.1.A1_at	CD411626	-	-	9e-1	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	Gma.13377.2.S1_at	CD409238	-	-	3e-2	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	GmaAffx.4994.1.A1_at	BI968277	-	-	7e-1	At1g30475	-	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.96	Gma.15030.1.A1_at	CD402998	-	-	4e-1	At5g16100	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.94	Gma.16479.1.A1_at	CD404285	-	-	4e-6	At5g27390	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.95	GmaAffx.6572.1.S1_s_at	CA786022	-	-	3e-7	At3g27840	RPL12-B (ribosomal protein l12-b)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.94	Gma.8034.2.S1_at	CD403759	-	-	5e-4	At1g74730	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.94	Gma.5672.1.A1_at	D45857.1	-	-	3e-47	At4g18480	CHLI1	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.91	Gma.16901.1.A1_at	BE804599	-	-	1e-1	At2g31430	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.95	Gma.1355.2.S1_s_at	CD401319	-	-	3e-2	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.94	Gma.1666.1.S1_at	BG508327	-	-	8e-37	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.92	Gma.4613.4.S1_at	CD397971	-	-	8e-3	At1g67740	PSBY	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.94	Gma.4613.4.S1_x_at	CD397971	-	-	8e-3	At1g67740	PSBY	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.90	GmaAffx.4079.1.S1_at	BG154959	-	-	4e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.95	Gma.17709.1.S1_at	CD413509	-	-	3e+0	At3g46780	PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	GmaAffx.32256.1.S1_at	BI941634	-	-	4e-6	At4g37230	oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.93	GmaAffx.38528.1.S1_at	BE190428	-	-	4e+0	At3g42790	AL3 (ALFIN-LIKE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.5	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
12.3	99.5	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
11.4	99.4	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
10.4	99.3	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
10.2	99.3	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.9	99.3	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.6	99.2	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.5	99.2	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.2	99.2	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.0	99.2	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.6	99.1	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.6	99.1	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.4	99.1	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.3	99.1	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.8	99.0	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.8	99.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.8	99.0	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.5	98.9	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2	98.9	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8	98.7	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
6.8	98.7	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.2	98.6	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
6.1	98.5	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.0	98.5	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.7	98.4	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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