Co-expression analysis

Gene ID	GmaAffx.497.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g02500: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) (HF=4e-78)
Module size	22 genes
NF	0.45
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.2	0.96	GmaAffx.497.1.S1_at	CA784527	-	-	4e-78	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	GmaAffx.46855.1.S1_at	BQ612842	-	-	9e-4	At2g04740	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	Gma.16233.1.S1_at	BE659138	-	-	7e-7	At3g06670	binding	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.97	GmaAffx.73949.1.S1_at	BG362762	-	-	4e-42	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.97	Gma.15891.2.S1_s_at	BI316425	-	-	1e-3	At1g22800	methyltransferase	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.97	GmaAffx.2349.1.S1_at	CD406663	-	-	5e-2	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.10829.1.S1_a_at	CD404695	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.6393.2.S1_a_at	BM891503	-	-	6e-17	At5g53000	TAP46 (2A phosphatase associated protein of 46 kD)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.97	GmaAffx.18743.1.S1_at	BI970522	-	-	4e-1	At5g26770	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.30561.1.S1_at	AW781058	-	-	2e-1	At1g63260	TET10 (TETRASPANIN10)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.4288.1.S1_at	BE659478	-	-	3e+0	At1g34790	TT1 (transparent testa 1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	GmaAffx.37923.1.A1_s_at	BU547349	-	-	2e+1	At5g51090	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.4412.1.S1_s_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.97	Gma.15552.1.S1_at	CA852615	-	-	1e+1	At4g27170	2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.97	GmaAffx.8247.2.S1_at	BU550218	-	-	4e-2	At4g30680	MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	GmaAffx.12491.1.S1_at	BE347527	-	-	1e+0	At5g23380	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	GmaAffx.63071.1.S1_at	BE807790	-	-	3e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	GmaAffx.84584.1.S1_at	BI699835	-	-	1e+0	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	Gma.8173.1.A1_at	BF598954	-	-	3e-18	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.97	Gma.2338.3.S1_at	BI426604	-	-	3e-48	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	Gma.8234.1.S1_at	BQ613075	-	-	1e-24	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.7858.1.A1_at	AW733417	-	-	5e-3	At1g04230	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.9	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.6	98.3	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.5	98.3	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.1	97.3	GSM201119	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.0	97.2	GSM147955	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.0	97.2	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.0	97.2	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.7	96.8	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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