Co-expression analysis

Gene ID	GmaAffx.49521.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g65780: ATBCAT-5 (HF=1e-19)
Module size	6 genes
NF	0.01
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	GmaAffx.49521.1.S1_at	AW348568	-	-	1e-19	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.94	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	GmaAffx.92881.1.S1_at	CF808606	-	-	1e-4	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	GmaAffx.91659.1.S1_s_at	CF807384	-	-	5e-29	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	GmaAffx.57330.2.S1_at	AW432207	-	-	4e-18	At2g04650	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.96	Gma.2000.1.S1_at	AW309844	-	-	3e-21	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.2520.1.A1_at, orthologous to the query gene, GmaAffx.49521.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.2520.1.A1_at	At5g65780	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.5373.1.S1_at	At5g65780	hypothetical protein LOC100276438	-	1e+0	At5g26170	WRKY50	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.5608.1.A1_at	At5g65780	-	-	8e+0	At4g17650	aromatic-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.1961.1.A1_at	At5g65780	Glutathione S-transferase12	-	2e+0	At4g26620	sucrase-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.16525.3.A1_x_at	At5g65780	deoxy xylulose synthase 2	-	7e-44	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.4016.1.S1_at	At5g65780	hypothetical protein LOC100193710	-	9e-1	At5g64720	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage