CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.49521.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g65780: ATBCAT-5 (HF=1e-19)

Module size 6 genes

NF 0.01

%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.96 GmaAffx.49521.1.S1_at AW348568 - - 1e-19 At5g65780 ATBCAT-5 O.I. H.G. S.X.
0.38 53.3 0.94 GmaAffx.49521.2.S1_at BF066739 - - 5e-34 At5g65780 ATBCAT-5 O.I. H.G. S.X.
0.01 3.4 0.96 GmaAffx.92881.1.S1_at CF808606 - - 1e-4 At5g48655 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.01 3.4 0.96 GmaAffx.91659.1.S1_s_at CF807384 - - 5e-29 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.01 3.4 0.96 GmaAffx.57330.2.S1_at AW432207 - - 4e-18 At2g04650 ADP-glucose pyrophosphorylase family protein O.I. H.G. S.X.
- 1.4 0.96 Gma.2000.1.S1_at AW309844 - - 3e-21 At4g17830 peptidase M20/M25/M40 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.6	0.96	GmaAffx.49521.1.S1_at	AW348568	-	-	1e-19	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.
0.38	53.3	0.94	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.
0.01	3.4	0.96	GmaAffx.92881.1.S1_at	CF808606	-	-	1e-4	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.01	3.4	0.96	GmaAffx.91659.1.S1_s_at	CF807384	-	-	5e-29	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.
0.01	3.4	0.96	GmaAffx.57330.2.S1_at	AW432207	-	-	4e-18	At2g04650	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.
-	1.4	0.96	Gma.2000.1.S1_at	AW309844	-	-	3e-21	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.41318.1.S1_a_at, orthologous to the query gene, GmaAffx.49521.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 93.8 PtpAffx.41318.1.S1_a_at At5g65780 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 O.I. H.G. S.X.
0.53 80.5 PtpAffx.158194.1.A1_at At5g65780 hypothetical protein - 2e+0 At5g06770 KH domain-containing protein / zinc finger (CCCH type) family protein O.I. H.G. S.X.
0.50 78.6 PtpAffx.22672.1.S1_at At5g65780 hypothetical protein - 4e-42 At5g47790 forkhead-associated domain-containing protein / FHA domain-containing protein O.I. H.G. S.X.
0.46 73.7 PtpAffx.201628.1.S1_at At5g65780 hypothetical protein - 8e-2 At1g06060 RanBPM-related O.I. H.G. S.X.
0.44 71.9 Ptp.5251.1.S1_s_at At5g65780 hypothetical protein - 6e-3 At3g04710 ankyrin repeat family protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.100452.1.S1_at At5g65780 hypothetical protein - 1e-7 At1g68310 vacuolar sorting signal binding O.I. H.G. S.X.
0.35 59.7 Ptp.5550.1.S1_at At5g65780 hypothetical protein - 1e-42 At4g36960 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.34 58.3 PtpAffx.4950.1.S1_at At5g65780 hypothetical protein - 2e-54 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative O.I. H.G. S.X.
0.33 57.5 PtpAffx.162072.1.S1_s_at At5g65780 hypothetical protein - 4e-11 At5g15440 EDL1 (EID1-like 1) O.I. H.G. S.X.
0.29 50.5 Ptp.424.2.A1_s_at At5g65780 global transcription factor group - 7e-49 At4g08350 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) O.I. H.G. S.X.
0.27 47.1 PtpAffx.11443.1.S1_a_at At5g65780 hypothetical protein - 1e-18 At2g39760 BPM3 O.I. H.G. S.X.
0.27 47.1 PtpAffx.32449.1.A1_at At5g65780 hypothetical protein - 1e-29 At1g21080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.26 45.2 Ptp.1985.2.A1_s_at At5g65780 hypothetical protein - 3e-20 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.26 45.2 Ptp.7216.3.S1_s_at At5g65780 hypothetical protein - 3e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) O.I. H.G. S.X.
0.25 43.6 Ptp.6543.1.S1_at At5g65780 hypothetical protein - 2e-121 At4g15900 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) O.I. H.G. S.X.
0.19 32.7 Ptp.6005.1.S1_at At5g65780 hypothetical protein - 1e-44 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.74	93.8	PtpAffx.41318.1.S1_a_at	At5g65780	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.
0.53	80.5	PtpAffx.158194.1.A1_at	At5g65780	hypothetical protein	-	2e+0	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.
0.50	78.6	PtpAffx.22672.1.S1_at	At5g65780	hypothetical protein	-	4e-42	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.
0.46	73.7	PtpAffx.201628.1.S1_at	At5g65780	hypothetical protein	-	8e-2	At1g06060	RanBPM-related	O.I.	H.G.	S.X.
0.44	71.9	Ptp.5251.1.S1_s_at	At5g65780	hypothetical protein	-	6e-3	At3g04710	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.36	61.6	PtpAffx.100452.1.S1_at	At5g65780	hypothetical protein	-	1e-7	At1g68310	vacuolar sorting signal binding	O.I.	H.G.	S.X.
0.35	59.7	Ptp.5550.1.S1_at	At5g65780	hypothetical protein	-	1e-42	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.34	58.3	PtpAffx.4950.1.S1_at	At5g65780	hypothetical protein	-	2e-54	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.
0.33	57.5	PtpAffx.162072.1.S1_s_at	At5g65780	hypothetical protein	-	4e-11	At5g15440	EDL1 (EID1-like 1)	O.I.	H.G.	S.X.
0.29	50.5	Ptp.424.2.A1_s_at	At5g65780	global transcription factor group	-	7e-49	At4g08350	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.11443.1.S1_a_at	At5g65780	hypothetical protein	-	1e-18	At2g39760	BPM3	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.32449.1.A1_at	At5g65780	hypothetical protein	-	1e-29	At1g21080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.26	45.2	Ptp.1985.2.A1_s_at	At5g65780	hypothetical protein	-	3e-20	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.
0.26	45.2	Ptp.7216.3.S1_s_at	At5g65780	hypothetical protein	-	3e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.
0.25	43.6	Ptp.6543.1.S1_at	At5g65780	hypothetical protein	-	2e-121	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.
0.19	32.7	Ptp.6005.1.S1_at	At5g65780	hypothetical protein	-	1e-44	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	GmaAffx.49521.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g65780: ATBCAT-5 (HF=1e-19)
Module size	6 genes
NF	0.01
%ile	5.8

Co-expression analysis

Gene ID GmaAffx.49521.1.S1_at Gene name Homology with ArabidopsisSimilar to At5g65780: ATBCAT-5 (HF=1e-19) Module size 6 genes NF 0.01 %ile 5.8

Co-expressed genes

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID GmaAffx.49521.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g65780: ATBCAT-5 (HF=1e-19)

Module size 6 genes

NF 0.01

%ile 5.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays