Co-expression analysis

Gene ID GmaAffx.49521.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g65780: ATBCAT-5 (HF=1e-19)
Module size 6 genes
NF 0.01
%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3853.30.94GmaAffx.49521.2.S1_atBF066739--5e-34At5g65780ATBCAT-5O.I.H.G.S.X. finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X. (Ser/Arg-rich protein 34a)O.I.H.G.S.X. pyrophosphorylase family proteinO.I.H.G.S.X.
-1.40.96Gma.2000.1.S1_atAW309844--3e-21At4g17830peptidase M20/M25/M40 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0558400, orthologous to the query gene, GmaAffx.49521.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.6Os05g0558400At5g65780-Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC (Atbcat-3)5e-24At5g65780ATBCAT-5O.I.H.G.S.X.
0.3134.5Os04g0564600At5g65780-HMG1 protein4e-1At4g33310unknown proteinO.I.H.G.S.X.
0.2931.1Os08g0547000At5g65780-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e+0At1g16810unknown proteinO.I.H.G.S.X.
0.2524.1Os07g0587400At5g65780-Eukaryotic peptide chain release factor subunit1-3 (eRF1-3) (Eukaryotic release factor 1-3) (Omnipotentsuppressor protein 1 homolog 3) (SUP1 homolog 3)4e-145At1g12920ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)O.I.H.G.S.X.
0.149.3Os05g0564200At5g65780-U2 snRNP auxiliary factor, small subunit2e-22At1g27650ATU2AF35AO.I.H.G.S.X.
0.105.7Os02g0199900At5g65780-26S proteasome regulatory complex subunit p42D2e-91At5g43010RPT4AO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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