Co-expression analysis

Gene ID	GmaAffx.49521.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g65780: ATBCAT-5 (HF=1e-19)
Module size	6 genes
NF	0.01
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	GmaAffx.49521.1.S1_at	AW348568	-	-	1e-19	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.94	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	GmaAffx.92881.1.S1_at	CF808606	-	-	1e-4	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	GmaAffx.91659.1.S1_s_at	CF807384	-	-	5e-29	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	GmaAffx.57330.2.S1_at	AW432207	-	-	4e-18	At2g04650	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.96	Gma.2000.1.S1_at	AW309844	-	-	3e-21	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig8040_at, orthologous to the query gene, GmaAffx.49521.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig8040_at	At5g65780	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig24535_at	At5g65780	-	-	2e-1	At3g51220	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig16427_at	At5g65780	-	-	9e-2	At5g10120	ethylene insensitive 3 family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig11880_at	At5g65780	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig20118_at	At5g65780	-	-	8e-22	At5g17460	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig1193_at	At5g65780	-	-	2e-2	At1g01520	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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