Co-expression analysis

Gene ID GmaAffx.48461.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g24400: LHT2 (LYSINE HISTIDINE TRANSPORTER 2) (HF=4e-15)
Module size 10 genes
NF 0.35
%ile 63.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5778.80.66GmaAffx.48461.1.S1_atAW396191--4e-15At1g24400LHT2 (LYSINE HISTIDINE TRANSPORTER 2)O.I.H.G.S.X.
0.4463.30.84GmaAffx.65736.1.S1_s_atCA935185--1e+0At4g39700heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.4057.10.84Gma.4717.1.S1_atAW309856--1e-13At3g10600CAT7 (CATIONIC AMINO ACID TRANSPORTER 7)O.I.H.G.S.X.
0.3650.80.76GmaAffx.33772.1.S1_atCA803018--3e+0At5g43570serine-type endopeptidase inhibitorO.I.H.G.S.X.
0.3650.80.79Gma.16483.1.S1_atCD398612--2e-4At5g14450GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3650.80.82Gma.12528.1.A1_atCD390464--6e-1At1g49510emb1273 (embryo defective 1273)O.I.H.G.S.X.
0.3346.10.84GmaAffx.79004.1.S1_atBU761215MADS-box protein-2e-17At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.2939.00.84Gma.15180.1.S1_atCD408129--2e-17At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)O.I.H.G.S.X.
0.1822.30.78Gma.13615.1.S1_atBM732166--6e-1At5g48575unknown proteinO.I.H.G.S.X.
0.1721.20.77Gma.12873.1.S1_atCD393774--4e+0At5g05598-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.899.6GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
14.599.6GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
14.499.6GSM191081Soybean_Cotyledon_EN1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
14.399.6GSM182043Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
13.099.5GSM191082Soybean_Cotyledon_EN2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
12.399.5GSM182037Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
11.999.4GSM182044Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
11.099.4GSM147952Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
10.399.3GSM182038Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
9.499.2GSM147951Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
8.799.1GSM147942Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
8.099.0GSM147943Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
7.698.9GSM147953Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
7.598.9GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.998.5GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.998.0GSM147944Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.597.7GSM201126Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.097.2GSM201127Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.296.0GSM184828Whole Seed at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.296.0GSM184829Whole Seed at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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