Co-expression analysis

Gene ID	GmaAffx.47831.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g14970: zinc finger (C3HC4-type RING finger) family protein (HF=8e-1)
Module size	18 genes
NF	0.26
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	93.2	0.88	GmaAffx.47831.1.S1_at	CA783653	-	-	8e-1	At3g14970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.91	GmaAffx.82504.1.S1_at	BM086522	-	-	2e-11	At1g60600	ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.93	Gma.13031.2.S1_at	BI320501	-	-	2e-3	At1g36390	co-chaperone grpE family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	Gma.17429.1.S1_at	AW567751	-	-	6e-6	At1g28150	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	GmaAffx.84471.1.S1_at	BM094307	-	-	1e-18	At4g31040	proton extrusion protein-related	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.93	GmaAffx.13399.1.S1_at	BG352685	chloroplast pentose phosphate transporter	-	8e-26	At5g17630	glucose-6-phosphate/phosphate translocator, putative	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.94	GmaAffx.5882.1.S1_at	BE822585	-	-	5e+0	At5g53588	CPuORF50 (Conserved peptide upstream open reading frame 50)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.91	GmaAffx.79658.1.S1_at	BQ133682	-	-	9e-1	At1g06760	histone H1, putative	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.94	GmaAffx.14734.1.A1_at	BQ079911	-	-	7e-9	At1g02475	-	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.93	GmaAffx.83052.1.S1_at	BQ133838	-	-	2e-1	At5g48350	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.92	GmaAffx.37701.1.S1_at	BM893481	-	-	4e+0	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.94	GmaAffx.15075.1.S1_at	BU084078	-	-	2e-23	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.94	GmaAffx.17650.1.S1_at	BM084941	homogentisate phytyltransferase VTE2-2	-	3e-44	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.93	GmaAffx.28909.1.S1_at	BU545641	-	-	2e-24	At2g23840	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.95	Gma.12855.1.S1_at	BG045651	-	-	9e-20	At5g14460	pseudouridine synthase/ transporter	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.94	Gma.15790.1.S1_at	CD401713	-	-	5e-6	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.93	Gma.13031.1.A1_at	CD402040	-	-	1e+0	At2g30115	-	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.96	Gma.1205.2.S1_a_at	BU081316	-	-	5e-32	At2g04842	EMB2761 (EMBRYO DEFECTIVE 2761)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.3	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.6	99.2	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.6	99.2	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.7	99.1	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.3	99.1	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.3	99.1	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.2	99.0	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.8	99.0	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.5	98.9	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.0	98.8	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8	98.7	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8	98.7	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8	98.7	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8	98.7	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.7	98.7	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.5	98.7	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.4	98.6	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.3	98.6	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.2	98.6	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.2	98.6	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.2	98.6	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.2	98.6	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.1	98.5	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.1	98.5	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.0	98.5	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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