Co-expression analysis

Gene ID	GmaAffx.46686.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g07570: APK1A (HF=1e-5)
Module size	10 genes
NF	0.41
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.4	0.95	GmaAffx.46686.1.S1_at	BQ081277	-	-	1e-5	At1g07570	APK1A	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.97	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	Gma.3639.1.S1_at	AB083030.1	syringolide-induced protein B15-3-5	-	1e-4	At2g38600	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	GmaAffx.4941.1.S1_at	BI971689	-	-	6e-1	At2g31170	SYCO ARATH	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	Gma.7325.1.S1_at	BI893997	-	-	2e+0	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.2457.1.S1_at	BI967559	-	-	2e+0	At1g61795	-	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.96	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.97	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the rice gene, Os01g0973500, orthologous to the query gene, GmaAffx.46686.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	Os01g0973500	At1g07570	-	Protein kinase APK1A (EC 2.7.1.-)	7e-48	At1g07570	APK1A	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os02g0740400	At1g07570	-	Lipolytic enzyme, G-D-S-L family protein	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os10g0560700	At1g07570	-	Pathogenesis-related transcriptional factor andERF domain containing protein	2e-2	At3g06870	proline-rich family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3.0	Os02g0692000	At1g07570	-	-	2e-8	At3g03550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	Os09g0299400	At1g07570	-	Sodium-and chloride-activated ATP-sensitivepotassium channel	3e+0	At2g36026	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	Os08g0166400	At1g07570	-	SWIM Zn-finger domain containing protein	9e-1	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage