Co-expression analysis

Gene ID	GmaAffx.46686.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g07570: APK1A (HF=1e-5)
Module size	10 genes
NF	0.41
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.4	0.95	GmaAffx.46686.1.S1_at	BQ081277	-	-	1e-5	At1g07570	APK1A	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.97	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	Gma.3639.1.S1_at	AB083030.1	syringolide-induced protein B15-3-5	-	1e-4	At2g38600	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	GmaAffx.4941.1.S1_at	BI971689	-	-	6e-1	At2g31170	SYCO ARATH	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	Gma.7325.1.S1_at	BI893997	-	-	2e+0	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.2457.1.S1_at	BI967559	-	-	2e+0	At1g61795	-	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.96	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.97	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig17814_at, orthologous to the query gene, GmaAffx.46686.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig17814_at	At1g07570	-	-	1e-25	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig10844_at	At1g07570	-	-	1e-1	At5g15320	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig15063_at	At1g07570	-	-	2e+0	At4g13690	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig1493_at	At1g07570	-	-	8e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig6509_at	At1g07570	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig12918_at	At1g07570	-	-	3e+1	At5g02280	synbindin, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage